Hb_014102_010

Information

Type -
Description -
Location Contig14102: 2875-7930
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014102_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_003688_120 0.0220243294 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
3 Hb_000806_010 0.0643018949 - - PREDICTED: hevamine-A-like [Jatropha curcas]
4 Hb_000649_090 0.0713819313 - - unnamed protein product [Vitis vinifera]
5 Hb_005207_040 0.0796580848 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Cicer arietinum]
6 Hb_169960_010 0.1197163171 - - -
7 Hb_002559_020 0.1217063697 transcription factor TF Family: TUB -
8 Hb_051410_010 0.1320176765 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
9 Hb_012077_010 0.1329818976 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
10 Hb_000914_010 0.1415699186 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
11 Hb_060783_010 0.1441146243 - - Chloride channel protein CLC-c [Populus trichocarpa]
12 Hb_006755_030 0.1473754253 - - BURP domain-containing protein, putative [Theobroma cacao]
13 Hb_022973_010 0.1490478297 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
14 Hb_011519_040 0.1694810178 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
15 Hb_036790_050 0.1697564626 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
16 Hb_008714_030 0.1701121271 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
17 Hb_044380_010 0.1711626944 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
18 Hb_000959_110 0.1763148204 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
19 Hb_004713_040 0.1777452611 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
20 Hb_001144_030 0.1794139619 - - hypothetical protein CICLE_v10023280mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_014102_010 Hb_014102_010 Hb_003688_120 Hb_003688_120 Hb_014102_010--Hb_003688_120 Hb_000806_010 Hb_000806_010 Hb_014102_010--Hb_000806_010 Hb_000649_090 Hb_000649_090 Hb_014102_010--Hb_000649_090 Hb_005207_040 Hb_005207_040 Hb_014102_010--Hb_005207_040 Hb_169960_010 Hb_169960_010 Hb_014102_010--Hb_169960_010 Hb_002559_020 Hb_002559_020 Hb_014102_010--Hb_002559_020 Hb_003688_120--Hb_005207_040 Hb_003688_120--Hb_000649_090 Hb_003688_120--Hb_000806_010 Hb_003688_120--Hb_169960_010 Hb_003688_120--Hb_002559_020 Hb_000806_010--Hb_000649_090 Hb_000806_010--Hb_005207_040 Hb_008714_030 Hb_008714_030 Hb_000806_010--Hb_008714_030 Hb_051410_010 Hb_051410_010 Hb_000806_010--Hb_051410_010 Hb_000649_090--Hb_051410_010 Hb_000914_010 Hb_000914_010 Hb_000649_090--Hb_000914_010 Hb_000649_090--Hb_169960_010 Hb_005207_040--Hb_002559_020 Hb_060783_010 Hb_060783_010 Hb_005207_040--Hb_060783_010 Hb_005207_040--Hb_169960_010 Hb_001144_030 Hb_001144_030 Hb_005207_040--Hb_001144_030 Hb_000014_200 Hb_000014_200 Hb_169960_010--Hb_000014_200 Hb_169960_010--Hb_001144_030 Hb_169960_010--Hb_002559_020 Hb_002559_020--Hb_060783_010 Hb_036790_050 Hb_036790_050 Hb_002559_020--Hb_036790_050 Hb_002559_020--Hb_001144_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0234916 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00478849 0.0257255

CAGE analysis