Hb_000875_090

Information

Type -
Description -
Location Contig875: 173295-174490
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_175123
description hypothetical protein
nr
ID CAN62478.1
description hypothetical protein VITISV_005326 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AH53
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005326 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tho complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000875_090 0.0 - - hypothetical protein VITISV_005326 [Vitis vinifera]
2 Hb_001341_190 0.1109481996 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
3 Hb_002126_010 0.3002522781 - - predicted protein [Hordeum vulgare subsp. vulgare]
4 Hb_007975_020 0.3081564739 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_007718_020 0.3109446082 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
6 Hb_002255_080 0.3170565872 - - -
7 Hb_000094_030 0.3335807347 - - -
8 Hb_074670_010 0.3353204288 - - hypothetical protein VITISV_015625 [Vitis vinifera]
9 Hb_001652_070 0.3378309686 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
10 Hb_000925_060 0.3416943228 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
11 Hb_002311_260 0.3424754229 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
12 Hb_127127_010 0.3426325741 - - -
13 Hb_004662_020 0.3427448565 - - 40S ribosomal protein S9, putative [Ricinus communis]
14 Hb_033683_020 0.3432455245 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
15 Hb_001408_070 0.3463718591 - - -
16 Hb_004021_020 0.3469064045 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
17 Hb_177019_010 0.3500644332 - - Uncharacterized protein TCM_004012 [Theobroma cacao]
18 Hb_128196_020 0.3600601574 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
19 Hb_044486_030 0.3612679295 - - DMI1, partial [Cycas revoluta]
20 Hb_125431_010 0.3630113366 - - -

Gene co-expression network

sample Hb_000875_090 Hb_000875_090 Hb_001341_190 Hb_001341_190 Hb_000875_090--Hb_001341_190 Hb_002126_010 Hb_002126_010 Hb_000875_090--Hb_002126_010 Hb_007975_020 Hb_007975_020 Hb_000875_090--Hb_007975_020 Hb_007718_020 Hb_007718_020 Hb_000875_090--Hb_007718_020 Hb_002255_080 Hb_002255_080 Hb_000875_090--Hb_002255_080 Hb_000094_030 Hb_000094_030 Hb_000875_090--Hb_000094_030 Hb_001341_190--Hb_007975_020 Hb_001341_190--Hb_002255_080 Hb_001652_070 Hb_001652_070 Hb_001341_190--Hb_001652_070 Hb_001341_190--Hb_007718_020 Hb_000659_090 Hb_000659_090 Hb_001341_190--Hb_000659_090 Hb_002477_010 Hb_002477_010 Hb_002126_010--Hb_002477_010 Hb_001221_340 Hb_001221_340 Hb_002126_010--Hb_001221_340 Hb_012022_050 Hb_012022_050 Hb_002126_010--Hb_012022_050 Hb_000258_140 Hb_000258_140 Hb_002126_010--Hb_000258_140 Hb_007943_200 Hb_007943_200 Hb_002126_010--Hb_007943_200 Hb_007973_010 Hb_007973_010 Hb_002126_010--Hb_007973_010 Hb_007975_020--Hb_002255_080 Hb_007975_020--Hb_000659_090 Hb_095937_010 Hb_095937_010 Hb_007975_020--Hb_095937_010 Hb_006237_030 Hb_006237_030 Hb_007975_020--Hb_006237_030 Hb_145620_010 Hb_145620_010 Hb_007975_020--Hb_145620_010 Hb_000649_090 Hb_000649_090 Hb_007975_020--Hb_000649_090 Hb_001146_050 Hb_001146_050 Hb_007718_020--Hb_001146_050 Hb_004878_010 Hb_004878_010 Hb_007718_020--Hb_004878_010 Hb_033555_010 Hb_033555_010 Hb_007718_020--Hb_033555_010 Hb_050034_010 Hb_050034_010 Hb_007718_020--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_007718_020--Hb_007456_020 Hb_000771_090 Hb_000771_090 Hb_007718_020--Hb_000771_090 Hb_000117_150 Hb_000117_150 Hb_002255_080--Hb_000117_150 Hb_002255_080--Hb_001652_070 Hb_001737_040 Hb_001737_040 Hb_002255_080--Hb_001737_040 Hb_002311_260 Hb_002311_260 Hb_002255_080--Hb_002311_260 Hb_000422_070 Hb_000422_070 Hb_000094_030--Hb_000422_070 Hb_000107_180 Hb_000107_180 Hb_000094_030--Hb_000107_180 Hb_004917_030 Hb_004917_030 Hb_000094_030--Hb_004917_030 Hb_004109_180 Hb_004109_180 Hb_000094_030--Hb_004109_180 Hb_003642_020 Hb_003642_020 Hb_000094_030--Hb_003642_020 Hb_000457_190 Hb_000457_190 Hb_000094_030--Hb_000457_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.246104 0 0.141454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.144686 0 0.184595 0.25777

CAGE analysis