Hb_004917_030

Information

Type -
Description -
Location Contig4917: 31523-34279
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45327: 32535-34277
cDNA
(Sanger)
(ID:Location)		 002_E24.ab1: 32535-34277 , 015_C24.ab1: 32535-34277

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004917_030 0.0 - - -
2 Hb_128196_020 0.2135358332 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
3 Hb_000294_050 0.2223733611 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
4 Hb_003642_020 0.2624848129 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
5 Hb_001405_140 0.2690767211 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
6 Hb_002200_040 0.2695944495 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
7 Hb_002200_050 0.2708766891 - - unknown [Lotus japonicus]
8 Hb_000107_180 0.2715222571 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
9 Hb_002079_040 0.2746750547 - - hypothetical protein VITISV_018542 [Vitis vinifera]
10 Hb_008206_090 0.2752748998 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
11 Hb_003642_010 0.2766535504 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
12 Hb_002636_150 0.2769374395 - - -
13 Hb_002079_050 0.2769426812 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
14 Hb_000094_030 0.2770745005 - - -
15 Hb_095192_010 0.2773521414 - - hypothetical protein VITISV_043980 [Vitis vinifera]
16 Hb_002168_010 0.2809433467 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
17 Hb_000984_240 0.2812853576 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
18 Hb_001799_200 0.2831514624 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
19 Hb_000175_260 0.2835702214 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
20 Hb_002562_110 0.2893531079 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_004917_030 Hb_004917_030 Hb_128196_020 Hb_128196_020 Hb_004917_030--Hb_128196_020 Hb_000294_050 Hb_000294_050 Hb_004917_030--Hb_000294_050 Hb_003642_020 Hb_003642_020 Hb_004917_030--Hb_003642_020 Hb_001405_140 Hb_001405_140 Hb_004917_030--Hb_001405_140 Hb_002200_040 Hb_002200_040 Hb_004917_030--Hb_002200_040 Hb_002200_050 Hb_002200_050 Hb_004917_030--Hb_002200_050 Hb_128196_020--Hb_000294_050 Hb_003642_010 Hb_003642_010 Hb_128196_020--Hb_003642_010 Hb_009680_020 Hb_009680_020 Hb_128196_020--Hb_009680_020 Hb_000599_200 Hb_000599_200 Hb_128196_020--Hb_000599_200 Hb_000733_190 Hb_000733_190 Hb_128196_020--Hb_000733_190 Hb_001195_070 Hb_001195_070 Hb_000294_050--Hb_001195_070 Hb_007477_050 Hb_007477_050 Hb_000294_050--Hb_007477_050 Hb_003103_010 Hb_003103_010 Hb_000294_050--Hb_003103_010 Hb_000175_260 Hb_000175_260 Hb_000294_050--Hb_000175_260 Hb_000345_080 Hb_000345_080 Hb_000294_050--Hb_000345_080 Hb_006153_030 Hb_006153_030 Hb_000294_050--Hb_006153_030 Hb_002079_040 Hb_002079_040 Hb_003642_020--Hb_002079_040 Hb_008206_090 Hb_008206_090 Hb_003642_020--Hb_008206_090 Hb_048702_010 Hb_048702_010 Hb_003642_020--Hb_048702_010 Hb_002611_030 Hb_002611_030 Hb_003642_020--Hb_002611_030 Hb_094437_040 Hb_094437_040 Hb_003642_020--Hb_094437_040 Hb_001059_140 Hb_001059_140 Hb_003642_020--Hb_001059_140 Hb_000390_190 Hb_000390_190 Hb_001405_140--Hb_000390_190 Hb_000172_380 Hb_000172_380 Hb_001405_140--Hb_000172_380 Hb_000445_150 Hb_000445_150 Hb_001405_140--Hb_000445_150 Hb_001405_140--Hb_003642_010 Hb_000291_290 Hb_000291_290 Hb_001405_140--Hb_000291_290 Hb_001405_140--Hb_007477_050 Hb_002079_050 Hb_002079_050 Hb_002200_040--Hb_002079_050 Hb_000210_240 Hb_000210_240 Hb_002200_040--Hb_000210_240 Hb_006274_040 Hb_006274_040 Hb_002200_040--Hb_006274_040 Hb_003606_060 Hb_003606_060 Hb_002200_040--Hb_003606_060 Hb_004303_040 Hb_004303_040 Hb_002200_040--Hb_004303_040 Hb_008447_030 Hb_008447_030 Hb_002200_040--Hb_008447_030 Hb_000160_160 Hb_000160_160 Hb_002200_050--Hb_000160_160 Hb_003688_110 Hb_003688_110 Hb_002200_050--Hb_003688_110 Hb_025190_010 Hb_025190_010 Hb_002200_050--Hb_025190_010 Hb_002200_050--Hb_008447_030 Hb_025288_010 Hb_025288_010 Hb_002200_050--Hb_025288_010 Hb_004709_020 Hb_004709_020 Hb_002200_050--Hb_004709_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142596 0 0.246569 1.14405 0 0.827385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.339752 0.5348 0 0.123207 0.844142

CAGE analysis