Hb_128196_020

Information

Type -
Description -
Location Contig128196: 8331-12323
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00200g
description hypothetical protein
nr
ID XP_010245402.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
swissprot
ID Q0DM51
description DEAD-box ATP-dependent RNA helicase 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
trembl
ID A9PJW0
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0005634
description dead-box atp-dependent rna helicase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128196_020 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
2 Hb_000294_050 0.1846957949 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
3 Hb_004917_030 0.2135358332 - - -
4 Hb_003642_010 0.2147983835 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_009680_020 0.2154850693 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
6 Hb_000599_200 0.2167428528 - - ABC transporter family protein [Populus trichocarpa]
7 Hb_000733_190 0.2188064257 - - zinc ion binding protein, putative [Ricinus communis]
8 Hb_000984_240 0.2188402256 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
9 Hb_000254_140 0.2190321648 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
10 Hb_002477_010 0.2198746528 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002126_010 0.2271682352 - - predicted protein [Hordeum vulgare subsp. vulgare]
12 Hb_001790_030 0.2283478071 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
13 Hb_000438_140 0.2289735422 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
14 Hb_016219_030 0.2339383575 - - cytochrome P450, putative [Ricinus communis]
15 Hb_003994_020 0.2346299002 - - -
16 Hb_000328_050 0.2375496428 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
17 Hb_001405_140 0.2378271436 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
18 Hb_021079_010 0.239514949 - - PREDICTED: histone H2B-like [Populus euphratica]
19 Hb_001799_200 0.2429309106 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
20 Hb_000175_260 0.2436578458 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]

Gene co-expression network

sample Hb_128196_020 Hb_128196_020 Hb_000294_050 Hb_000294_050 Hb_128196_020--Hb_000294_050 Hb_004917_030 Hb_004917_030 Hb_128196_020--Hb_004917_030 Hb_003642_010 Hb_003642_010 Hb_128196_020--Hb_003642_010 Hb_009680_020 Hb_009680_020 Hb_128196_020--Hb_009680_020 Hb_000599_200 Hb_000599_200 Hb_128196_020--Hb_000599_200 Hb_000733_190 Hb_000733_190 Hb_128196_020--Hb_000733_190 Hb_001195_070 Hb_001195_070 Hb_000294_050--Hb_001195_070 Hb_007477_050 Hb_007477_050 Hb_000294_050--Hb_007477_050 Hb_003103_010 Hb_003103_010 Hb_000294_050--Hb_003103_010 Hb_000175_260 Hb_000175_260 Hb_000294_050--Hb_000175_260 Hb_000345_080 Hb_000345_080 Hb_000294_050--Hb_000345_080 Hb_006153_030 Hb_006153_030 Hb_000294_050--Hb_006153_030 Hb_004917_030--Hb_000294_050 Hb_003642_020 Hb_003642_020 Hb_004917_030--Hb_003642_020 Hb_001405_140 Hb_001405_140 Hb_004917_030--Hb_001405_140 Hb_002200_040 Hb_002200_040 Hb_004917_030--Hb_002200_040 Hb_002200_050 Hb_002200_050 Hb_004917_030--Hb_002200_050 Hb_016219_030 Hb_016219_030 Hb_003642_010--Hb_016219_030 Hb_000189_450 Hb_000189_450 Hb_003642_010--Hb_000189_450 Hb_004631_090 Hb_004631_090 Hb_003642_010--Hb_004631_090 Hb_000328_050 Hb_000328_050 Hb_003642_010--Hb_000328_050 Hb_002955_020 Hb_002955_020 Hb_003642_010--Hb_002955_020 Hb_000107_590 Hb_000107_590 Hb_003642_010--Hb_000107_590 Hb_017987_030 Hb_017987_030 Hb_009680_020--Hb_017987_030 Hb_000107_150 Hb_000107_150 Hb_009680_020--Hb_000107_150 Hb_000110_250 Hb_000110_250 Hb_009680_020--Hb_000110_250 Hb_000179_270 Hb_000179_270 Hb_009680_020--Hb_000179_270 Hb_009680_020--Hb_000733_190 Hb_002477_010 Hb_002477_010 Hb_009680_020--Hb_002477_010 Hb_000599_200--Hb_000733_190 Hb_001104_130 Hb_001104_130 Hb_000599_200--Hb_001104_130 Hb_000004_020 Hb_000004_020 Hb_000599_200--Hb_000004_020 Hb_000084_200 Hb_000084_200 Hb_000599_200--Hb_000084_200 Hb_000599_200--Hb_009680_020 Hb_002928_090 Hb_002928_090 Hb_000599_200--Hb_002928_090 Hb_001242_120 Hb_001242_120 Hb_000733_190--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_000733_190--Hb_001051_050 Hb_012733_040 Hb_012733_040 Hb_000733_190--Hb_012733_040 Hb_000733_190--Hb_002928_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0175382 0 0.0676493 0.178711 0.0164312 0.0704606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0801026 0.126021 0 0.0757089 0.195722

CAGE analysis