Hb_001405_140

Information

Type -
Description -
Location Contig1405: 186080-186676
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08350g
description POPTRDRAFT_648149; hypothetical protein
nr
ID XP_002305221.2
description hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H3C3
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s08350g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10974: 186068-186793
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001405_140 0.0 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
2 Hb_000390_190 0.1865467719 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000172_380 0.1958912362 - - small heat-shock protein, putative [Ricinus communis]
4 Hb_000445_150 0.2003171315 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
5 Hb_003642_010 0.2075274781 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_000291_290 0.2094153857 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007477_050 0.2098959804 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
8 Hb_001004_080 0.213547001 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
9 Hb_000294_050 0.213582357 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
10 Hb_009767_130 0.2140146657 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
11 Hb_005725_260 0.2142808613 - - squalene monooxygenase [Jatropha curcas]
12 Hb_002182_020 0.2149095279 - - Thylakoid lumenal 17.4 kDa protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_000096_190 0.216142096 - - unknown [Lotus japonicus]
14 Hb_001163_020 0.2175150052 desease resistance Gene Name: ABC_trans_N ATP-binding cassette transporter, putative [Ricinus communis]
15 Hb_001864_080 0.2176003284 - - PREDICTED: uncharacterized protein LOC105649405 [Jatropha curcas]
16 Hb_000189_480 0.2194519531 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
17 Hb_001793_050 0.2231310589 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
18 Hb_003687_250 0.2234337931 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
19 Hb_000062_400 0.2234778811 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001584_130 0.2246660937 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]

Gene co-expression network

sample Hb_001405_140 Hb_001405_140 Hb_000390_190 Hb_000390_190 Hb_001405_140--Hb_000390_190 Hb_000172_380 Hb_000172_380 Hb_001405_140--Hb_000172_380 Hb_000445_150 Hb_000445_150 Hb_001405_140--Hb_000445_150 Hb_003642_010 Hb_003642_010 Hb_001405_140--Hb_003642_010 Hb_000291_290 Hb_000291_290 Hb_001405_140--Hb_000291_290 Hb_007477_050 Hb_007477_050 Hb_001405_140--Hb_007477_050 Hb_004306_110 Hb_004306_110 Hb_000390_190--Hb_004306_110 Hb_000062_400 Hb_000062_400 Hb_000390_190--Hb_000062_400 Hb_000860_060 Hb_000860_060 Hb_000390_190--Hb_000860_060 Hb_000189_480 Hb_000189_480 Hb_000390_190--Hb_000189_480 Hb_001976_030 Hb_001976_030 Hb_000390_190--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_000390_190--Hb_000920_310 Hb_000059_270 Hb_000059_270 Hb_000172_380--Hb_000059_270 Hb_004735_020 Hb_004735_020 Hb_000172_380--Hb_004735_020 Hb_001080_070 Hb_001080_070 Hb_000172_380--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000172_380--Hb_000114_150 Hb_001220_050 Hb_001220_050 Hb_000172_380--Hb_001220_050 Hb_009020_040 Hb_009020_040 Hb_000172_380--Hb_009020_040 Hb_002596_080 Hb_002596_080 Hb_000445_150--Hb_002596_080 Hb_000417_170 Hb_000417_170 Hb_000445_150--Hb_000417_170 Hb_003994_300 Hb_003994_300 Hb_000445_150--Hb_003994_300 Hb_002157_270 Hb_002157_270 Hb_000445_150--Hb_002157_270 Hb_001584_130 Hb_001584_130 Hb_000445_150--Hb_001584_130 Hb_011310_040 Hb_011310_040 Hb_000445_150--Hb_011310_040 Hb_016219_030 Hb_016219_030 Hb_003642_010--Hb_016219_030 Hb_000189_450 Hb_000189_450 Hb_003642_010--Hb_000189_450 Hb_004631_090 Hb_004631_090 Hb_003642_010--Hb_004631_090 Hb_000328_050 Hb_000328_050 Hb_003642_010--Hb_000328_050 Hb_002955_020 Hb_002955_020 Hb_003642_010--Hb_002955_020 Hb_000107_590 Hb_000107_590 Hb_003642_010--Hb_000107_590 Hb_001864_080 Hb_001864_080 Hb_000291_290--Hb_001864_080 Hb_000256_080 Hb_000256_080 Hb_000291_290--Hb_000256_080 Hb_002182_020 Hb_002182_020 Hb_000291_290--Hb_002182_020 Hb_005144_120 Hb_005144_120 Hb_000291_290--Hb_005144_120 Hb_000291_290--Hb_000390_190 Hb_006925_050 Hb_006925_050 Hb_000291_290--Hb_006925_050 Hb_000172_440 Hb_000172_440 Hb_007477_050--Hb_000172_440 Hb_007477_050--Hb_000189_480 Hb_001104_130 Hb_001104_130 Hb_007477_050--Hb_001104_130 Hb_007477_050--Hb_003994_300 Hb_002400_320 Hb_002400_320 Hb_007477_050--Hb_002400_320 Hb_009661_030 Hb_009661_030 Hb_007477_050--Hb_009661_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.74028 0.790553 4.9087 11.5266 1.1346 2.6608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.56063 5.27683 0.13973 0.557563 13.9141

CAGE analysis