Hb_008206_090

Information

Type -
Description -
Location Contig8206: 92427-93314
Sequence    

Annotation

kegg
ID gmx:100811033
description uncharacterized LOC100811033
nr
ID XP_003549507.1
description PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
swissprot
ID -
description -
trembl
ID K7MK94
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59591: 91820-92464 , PASA_asmbl_59593: 91642-99797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008206_090 0.0 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
2 Hb_003642_020 0.190217729 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
3 Hb_033683_020 0.231093099 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
4 Hb_005271_230 0.2419411054 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
5 Hb_003397_020 0.2454620295 - - -
6 Hb_006910_050 0.2538946696 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
7 Hb_000049_130 0.258448335 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
8 Hb_010984_040 0.2644975994 - - hypothetical protein M569_17286, partial [Genlisea aurea]
9 Hb_004525_050 0.2672397544 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
10 Hb_000566_180 0.2685101055 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
11 Hb_048702_010 0.2713500513 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
12 Hb_000366_020 0.2739265596 - - -
13 Hb_004917_030 0.2752748998 - - -
14 Hb_002079_040 0.2760417307 - - hypothetical protein VITISV_018542 [Vitis vinifera]
15 Hb_007456_020 0.2771519345 - - unknown [Lotus japonicus]
16 Hb_024479_010 0.2822630548 - - beta-amyrin synthase [Euphorbia tirucalli]
17 Hb_002920_010 0.2825514791 - - PREDICTED: sulfiredoxin, chloroplastic/mitochondrial [Populus euphratica]
18 Hb_001711_080 0.2861885505 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
19 Hb_028089_020 0.2873932616 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
20 Hb_002611_030 0.2889102366 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_008206_090 Hb_008206_090 Hb_003642_020 Hb_003642_020 Hb_008206_090--Hb_003642_020 Hb_033683_020 Hb_033683_020 Hb_008206_090--Hb_033683_020 Hb_005271_230 Hb_005271_230 Hb_008206_090--Hb_005271_230 Hb_003397_020 Hb_003397_020 Hb_008206_090--Hb_003397_020 Hb_006910_050 Hb_006910_050 Hb_008206_090--Hb_006910_050 Hb_000049_130 Hb_000049_130 Hb_008206_090--Hb_000049_130 Hb_002079_040 Hb_002079_040 Hb_003642_020--Hb_002079_040 Hb_048702_010 Hb_048702_010 Hb_003642_020--Hb_048702_010 Hb_002611_030 Hb_002611_030 Hb_003642_020--Hb_002611_030 Hb_094437_040 Hb_094437_040 Hb_003642_020--Hb_094437_040 Hb_001059_140 Hb_001059_140 Hb_003642_020--Hb_001059_140 Hb_033683_020--Hb_003397_020 Hb_033683_010 Hb_033683_010 Hb_033683_020--Hb_033683_010 Hb_000950_030 Hb_000950_030 Hb_033683_020--Hb_000950_030 Hb_004627_010 Hb_004627_010 Hb_033683_020--Hb_004627_010 Hb_002157_270 Hb_002157_270 Hb_033683_020--Hb_002157_270 Hb_057556_010 Hb_057556_010 Hb_033683_020--Hb_057556_010 Hb_006422_030 Hb_006422_030 Hb_005271_230--Hb_006422_030 Hb_000566_180 Hb_000566_180 Hb_005271_230--Hb_000566_180 Hb_050034_010 Hb_050034_010 Hb_005271_230--Hb_050034_010 Hb_060391_010 Hb_060391_010 Hb_005271_230--Hb_060391_010 Hb_005271_230--Hb_006910_050 Hb_005271_230--Hb_002611_030 Hb_000115_370 Hb_000115_370 Hb_003397_020--Hb_000115_370 Hb_003397_020--Hb_000950_030 Hb_169018_010 Hb_169018_010 Hb_003397_020--Hb_169018_010 Hb_003397_020--Hb_004627_010 Hb_004055_020 Hb_004055_020 Hb_003397_020--Hb_004055_020 Hb_130367_010 Hb_130367_010 Hb_006910_050--Hb_130367_010 Hb_007527_070 Hb_007527_070 Hb_006910_050--Hb_007527_070 Hb_022891_010 Hb_022891_010 Hb_006910_050--Hb_022891_010 Hb_047691_010 Hb_047691_010 Hb_006910_050--Hb_047691_010 Hb_006910_050--Hb_002611_030 Hb_181838_010 Hb_181838_010 Hb_000049_130--Hb_181838_010 Hb_001814_060 Hb_001814_060 Hb_000049_130--Hb_001814_060 Hb_001221_200 Hb_001221_200 Hb_000049_130--Hb_001221_200 Hb_000350_030 Hb_000350_030 Hb_000049_130--Hb_000350_030 Hb_006693_040 Hb_006693_040 Hb_000049_130--Hb_006693_040 Hb_000556_010 Hb_000556_010 Hb_000049_130--Hb_000556_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.469397 0.608361 6.35933 0 4.14023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.863244 0.339056 0 0.879202 3.81813

CAGE analysis