Hb_006693_040

Information

Type -
Description -
Location Contig6693: 62566-64631
Sequence    

Annotation

kegg
ID rcu:RCOM_1539770
description hypothetical protein
nr
ID XP_012065747.1
description PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LGS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26484 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53361: 62557-64604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006693_040 0.0 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
2 Hb_000556_010 0.132511634 - - glycerate dehydrogenase, putative [Ricinus communis]
3 Hb_001819_020 0.1580666803 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
4 Hb_001584_280 0.1651436237 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
5 Hb_000193_210 0.1883879698 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
6 Hb_000856_400 0.1905488752 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
7 Hb_020805_040 0.1908164706 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
8 Hb_118283_010 0.19980602 - - conserved hypothetical protein [Ricinus communis]
9 Hb_025645_020 0.2016260453 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
10 Hb_015941_010 0.2023951517 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_000922_400 0.2038155968 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
12 Hb_000963_050 0.2043390856 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
13 Hb_005784_010 0.2061366467 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
14 Hb_001711_080 0.2068630672 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
15 Hb_001221_190 0.2107718779 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
16 Hb_000350_030 0.2115534709 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
17 Hb_150440_010 0.2180647501 - - -
18 Hb_007192_020 0.2207790812 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
19 Hb_000820_110 0.2214271465 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
20 Hb_003680_040 0.2218016644 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006693_040 Hb_006693_040 Hb_000556_010 Hb_000556_010 Hb_006693_040--Hb_000556_010 Hb_001819_020 Hb_001819_020 Hb_006693_040--Hb_001819_020 Hb_001584_280 Hb_001584_280 Hb_006693_040--Hb_001584_280 Hb_000193_210 Hb_000193_210 Hb_006693_040--Hb_000193_210 Hb_000856_400 Hb_000856_400 Hb_006693_040--Hb_000856_400 Hb_020805_040 Hb_020805_040 Hb_006693_040--Hb_020805_040 Hb_001004_080 Hb_001004_080 Hb_000556_010--Hb_001004_080 Hb_000556_010--Hb_000193_210 Hb_002182_020 Hb_002182_020 Hb_000556_010--Hb_002182_020 Hb_011310_040 Hb_011310_040 Hb_000556_010--Hb_011310_040 Hb_000556_010--Hb_000856_400 Hb_005784_010 Hb_005784_010 Hb_001819_020--Hb_005784_010 Hb_001951_080 Hb_001951_080 Hb_001819_020--Hb_001951_080 Hb_000345_550 Hb_000345_550 Hb_001819_020--Hb_000345_550 Hb_012484_050 Hb_012484_050 Hb_001819_020--Hb_012484_050 Hb_004223_060 Hb_004223_060 Hb_001819_020--Hb_004223_060 Hb_001032_020 Hb_001032_020 Hb_001819_020--Hb_001032_020 Hb_000014_210 Hb_000014_210 Hb_001584_280--Hb_000014_210 Hb_000820_110 Hb_000820_110 Hb_001584_280--Hb_000820_110 Hb_001584_280--Hb_000193_210 Hb_001584_280--Hb_001951_080 Hb_001584_280--Hb_005784_010 Hb_000297_140 Hb_000297_140 Hb_001584_280--Hb_000297_140 Hb_000193_210--Hb_000820_110 Hb_000077_100 Hb_000077_100 Hb_000193_210--Hb_000077_100 Hb_003177_040 Hb_003177_040 Hb_000193_210--Hb_003177_040 Hb_001493_060 Hb_001493_060 Hb_000193_210--Hb_001493_060 Hb_000108_180 Hb_000108_180 Hb_000193_210--Hb_000108_180 Hb_003462_040 Hb_003462_040 Hb_000193_210--Hb_003462_040 Hb_000932_050 Hb_000932_050 Hb_000856_400--Hb_000932_050 Hb_001195_130 Hb_001195_130 Hb_000856_400--Hb_001195_130 Hb_000853_180 Hb_000853_180 Hb_000856_400--Hb_000853_180 Hb_001450_040 Hb_001450_040 Hb_000856_400--Hb_001450_040 Hb_000856_400--Hb_000193_210 Hb_001579_300 Hb_001579_300 Hb_000856_400--Hb_001579_300 Hb_118283_010 Hb_118283_010 Hb_020805_040--Hb_118283_010 Hb_000963_050 Hb_000963_050 Hb_020805_040--Hb_000963_050 Hb_003540_120 Hb_003540_120 Hb_020805_040--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_020805_040--Hb_030685_010 Hb_001823_090 Hb_001823_090 Hb_020805_040--Hb_001823_090 Hb_000320_310 Hb_000320_310 Hb_020805_040--Hb_000320_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10007 1.72595 13.519 30.4249 1.15349 7.00744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59589 0.752767 0 0.688835 13.5398

CAGE analysis