Hb_169018_010

Information

Type -
Description -
Location Contig169018: 2775-3113
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00800g
description POPTRDRAFT_774122; hypothetical protein
nr
ID XP_002320009.2
description hypothetical protein POPTR_0014s00800g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IBM2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s00800g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169018_010 0.0 - - hypothetical protein POPTR_0014s00800g [Populus trichocarpa]
2 Hb_000115_370 0.087955593 - - PREDICTED: nicotinamide adenine dinucleotide transporter 2, mitochondrial [Jatropha curcas]
3 Hb_001276_030 0.1643961229 - - PREDICTED: uncharacterized protein LOC104881333 [Vitis vinifera]
4 Hb_011082_030 0.1667538675 - - hypothetical protein RCOM_0852210 [Ricinus communis]
5 Hb_031579_010 0.1762435738 - - JHL22C18.10 [Jatropha curcas]
6 Hb_011709_010 0.1762924982 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
7 Hb_003968_030 0.1845591817 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_010193_020 0.187199055 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
9 Hb_000160_010 0.1878037868 - - PREDICTED: uncharacterized protein LOC105638816 [Jatropha curcas]
10 Hb_000633_030 0.1887337519 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
11 Hb_000910_060 0.1913628196 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_001534_140 0.1914116043 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
13 Hb_003371_280 0.1934082225 - - unnamed protein product [Vitis vinifera]
14 Hb_007760_020 0.195871102 - - PREDICTED: expansin-A1 [Populus euphratica]
15 Hb_000866_400 0.1971959953 - - -
16 Hb_146036_010 0.1994862982 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
17 Hb_000034_060 0.1999429119 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
18 Hb_002370_020 0.2007906046 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
19 Hb_050160_010 0.2013935774 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
20 Hb_009151_010 0.2025856227 - - Peroxidase 3 [Morus notabilis]

Gene co-expression network

sample Hb_169018_010 Hb_169018_010 Hb_000115_370 Hb_000115_370 Hb_169018_010--Hb_000115_370 Hb_001276_030 Hb_001276_030 Hb_169018_010--Hb_001276_030 Hb_011082_030 Hb_011082_030 Hb_169018_010--Hb_011082_030 Hb_031579_010 Hb_031579_010 Hb_169018_010--Hb_031579_010 Hb_011709_010 Hb_011709_010 Hb_169018_010--Hb_011709_010 Hb_003968_030 Hb_003968_030 Hb_169018_010--Hb_003968_030 Hb_000115_370--Hb_003968_030 Hb_003397_020 Hb_003397_020 Hb_000115_370--Hb_003397_020 Hb_149507_010 Hb_149507_010 Hb_000115_370--Hb_149507_010 Hb_002370_020 Hb_002370_020 Hb_000115_370--Hb_002370_020 Hb_146036_010 Hb_146036_010 Hb_000115_370--Hb_146036_010 Hb_000160_010 Hb_000160_010 Hb_001276_030--Hb_000160_010 Hb_000633_030 Hb_000633_030 Hb_001276_030--Hb_000633_030 Hb_001232_060 Hb_001232_060 Hb_001276_030--Hb_001232_060 Hb_001269_180 Hb_001269_180 Hb_001276_030--Hb_001269_180 Hb_001456_030 Hb_001456_030 Hb_001276_030--Hb_001456_030 Hb_001276_030--Hb_011082_030 Hb_049955_010 Hb_049955_010 Hb_011082_030--Hb_049955_010 Hb_057862_010 Hb_057862_010 Hb_011082_030--Hb_057862_010 Hb_185608_010 Hb_185608_010 Hb_011082_030--Hb_185608_010 Hb_162450_010 Hb_162450_010 Hb_011082_030--Hb_162450_010 Hb_011344_040 Hb_011344_040 Hb_011082_030--Hb_011344_040 Hb_009151_010 Hb_009151_010 Hb_011082_030--Hb_009151_010 Hb_000034_060 Hb_000034_060 Hb_031579_010--Hb_000034_060 Hb_031579_010--Hb_000633_030 Hb_010193_020 Hb_010193_020 Hb_031579_010--Hb_010193_020 Hb_000866_400 Hb_000866_400 Hb_031579_010--Hb_000866_400 Hb_031579_010--Hb_011709_010 Hb_000620_050 Hb_000620_050 Hb_031579_010--Hb_000620_050 Hb_011709_010--Hb_010193_020 Hb_011709_010--Hb_049955_010 Hb_138585_010 Hb_138585_010 Hb_011709_010--Hb_138585_010 Hb_009252_070 Hb_009252_070 Hb_011709_010--Hb_009252_070 Hb_005269_060 Hb_005269_060 Hb_011709_010--Hb_005269_060 Hb_011709_010--Hb_057862_010 Hb_001430_040 Hb_001430_040 Hb_003968_030--Hb_001430_040 Hb_003968_030--Hb_146036_010 Hb_000635_100 Hb_000635_100 Hb_003968_030--Hb_000635_100 Hb_000186_150 Hb_000186_150 Hb_003968_030--Hb_000186_150 Hb_003968_030--Hb_149507_010 Hb_005332_160 Hb_005332_160 Hb_003968_030--Hb_005332_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.999041 5.74687 0 0.53648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.593077 2.53844

CAGE analysis