Hb_007527_070

Information

Type -
Description -
Location Contig7527: 40417-40843
Sequence    

Annotation

kegg
ID rcu:RCOM_0785080
description hypothetical protein
nr
ID XP_012076006.1
description PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KHR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11108 PE=4 SV=1
Gene Ontology
ID GO:0005741
description dgd1 suppressor 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56898: 40840-41069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007527_070 0.0 - - PREDICTED: uncharacterized protein LOC105637197 [Jatropha curcas]
2 Hb_006910_050 0.1680815229 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
3 Hb_002611_030 0.1936939386 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
4 Hb_000168_010 0.1960823995 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
5 Hb_130367_010 0.2120119574 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
6 Hb_047691_010 0.2157212929 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
7 Hb_121694_010 0.2183500899 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_000586_030 0.2192174034 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
9 Hb_009083_030 0.2200356031 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
10 Hb_048702_010 0.2226841304 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
11 Hb_089202_010 0.2235954806 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
12 Hb_007456_020 0.2258752524 - - unknown [Lotus japonicus]
13 Hb_022891_010 0.2273086988 - - chitinase-like protein [Hevea brasiliensis]
14 Hb_017014_010 0.2327109168 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
15 Hb_138462_010 0.2345929459 - - PREDICTED: SUMO-conjugating enzyme UBC9-A-like isoform X1 [Elaeis guineensis]
16 Hb_005271_230 0.2359683408 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
17 Hb_060391_010 0.2359919995 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_050034_010 0.2376636761 - - PREDICTED: cullin-1 [Jatropha curcas]
19 Hb_146834_010 0.2439164616 - - Uncharacterized protein TCM_035385 [Theobroma cacao]
20 Hb_010577_010 0.2467368826 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]

Gene co-expression network

sample Hb_007527_070 Hb_007527_070 Hb_006910_050 Hb_006910_050 Hb_007527_070--Hb_006910_050 Hb_002611_030 Hb_002611_030 Hb_007527_070--Hb_002611_030 Hb_000168_010 Hb_000168_010 Hb_007527_070--Hb_000168_010 Hb_130367_010 Hb_130367_010 Hb_007527_070--Hb_130367_010 Hb_047691_010 Hb_047691_010 Hb_007527_070--Hb_047691_010 Hb_121694_010 Hb_121694_010 Hb_007527_070--Hb_121694_010 Hb_006910_050--Hb_130367_010 Hb_022891_010 Hb_022891_010 Hb_006910_050--Hb_022891_010 Hb_005271_230 Hb_005271_230 Hb_006910_050--Hb_005271_230 Hb_006910_050--Hb_047691_010 Hb_006910_050--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_002611_030--Hb_017014_010 Hb_100137_010 Hb_100137_010 Hb_002611_030--Hb_100137_010 Hb_004466_060 Hb_004466_060 Hb_002611_030--Hb_004466_060 Hb_048702_010 Hb_048702_010 Hb_002611_030--Hb_048702_010 Hb_009083_030 Hb_009083_030 Hb_002611_030--Hb_009083_030 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_099116_010 Hb_099116_010 Hb_000168_010--Hb_099116_010 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_000168_010--Hb_004466_060 Hb_000586_030 Hb_000586_030 Hb_000168_010--Hb_000586_030 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020 Hb_130367_010--Hb_022891_010 Hb_002815_050 Hb_002815_050 Hb_130367_010--Hb_002815_050 Hb_007188_030 Hb_007188_030 Hb_130367_010--Hb_007188_030 Hb_003030_040 Hb_003030_040 Hb_130367_010--Hb_003030_040 Hb_001089_080 Hb_001089_080 Hb_130367_010--Hb_001089_080 Hb_001059_140 Hb_001059_140 Hb_047691_010--Hb_001059_140 Hb_047691_010--Hb_121694_010 Hb_041601_010 Hb_041601_010 Hb_047691_010--Hb_041601_010 Hb_017014_020 Hb_017014_020 Hb_047691_010--Hb_017014_020 Hb_047691_010--Hb_009083_030 Hb_121694_010--Hb_009083_030 Hb_184541_010 Hb_184541_010 Hb_121694_010--Hb_184541_010 Hb_010984_040 Hb_010984_040 Hb_121694_010--Hb_010984_040 Hb_004125_070 Hb_004125_070 Hb_121694_010--Hb_004125_070 Hb_121694_010--Hb_001059_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.430169 2.40797 13.353 0.516324 8.73896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324615 1.27701 2.61746 4.68324 2.85067

CAGE analysis