Hb_004627_010

Information

Type -
Description -
Location Contig4627: 19372-20835
Sequence    

Annotation

kegg
ID rcu:RCOM_0271200
description hypothetical protein
nr
ID XP_002534549.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C7C1
description Tetraspanin-6 OS=Arabidopsis thaliana GN=TET6 PE=2 SV=1
trembl
ID B9T8I0
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0271200 PE=4 SV=1
Gene Ontology
ID GO:0016021
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004627_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_150486_010 0.1823595795 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
3 Hb_002157_270 0.1902910193 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
4 Hb_000950_030 0.1916229643 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
5 Hb_033683_020 0.1961085896 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
6 Hb_000925_060 0.1994408063 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
7 Hb_048702_010 0.2018165684 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
8 Hb_000165_020 0.2027651985 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
9 Hb_003397_020 0.2102248603 - - -
10 Hb_006634_110 0.2109271945 - - BnaC04g40780D [Brassica napus]
11 Hb_000445_150 0.2151313053 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
12 Hb_147745_010 0.2159649436 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
13 Hb_000193_210 0.2160308375 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
14 Hb_001493_060 0.2164708798 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
15 Hb_001214_040 0.2186888781 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
16 Hb_001584_130 0.2205132921 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
17 Hb_002596_080 0.221901216 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
18 Hb_000236_230 0.2243661661 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
19 Hb_000189_440 0.2272960645 - - hypothetical protein JCGZ_23470 [Jatropha curcas]
20 Hb_002129_020 0.2315382819 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]

Gene co-expression network

sample Hb_004627_010 Hb_004627_010 Hb_150486_010 Hb_150486_010 Hb_004627_010--Hb_150486_010 Hb_002157_270 Hb_002157_270 Hb_004627_010--Hb_002157_270 Hb_000950_030 Hb_000950_030 Hb_004627_010--Hb_000950_030 Hb_033683_020 Hb_033683_020 Hb_004627_010--Hb_033683_020 Hb_000925_060 Hb_000925_060 Hb_004627_010--Hb_000925_060 Hb_048702_010 Hb_048702_010 Hb_004627_010--Hb_048702_010 Hb_000165_020 Hb_000165_020 Hb_150486_010--Hb_000165_020 Hb_001541_060 Hb_001541_060 Hb_150486_010--Hb_001541_060 Hb_000108_180 Hb_000108_180 Hb_150486_010--Hb_000108_180 Hb_025645_020 Hb_025645_020 Hb_150486_010--Hb_025645_020 Hb_000236_230 Hb_000236_230 Hb_150486_010--Hb_000236_230 Hb_001366_110 Hb_001366_110 Hb_150486_010--Hb_001366_110 Hb_011310_040 Hb_011310_040 Hb_002157_270--Hb_011310_040 Hb_002129_020 Hb_002129_020 Hb_002157_270--Hb_002129_020 Hb_002157_270--Hb_000950_030 Hb_002596_080 Hb_002596_080 Hb_002157_270--Hb_002596_080 Hb_001493_060 Hb_001493_060 Hb_002157_270--Hb_001493_060 Hb_002164_020 Hb_002164_020 Hb_002157_270--Hb_002164_020 Hb_012707_010 Hb_012707_010 Hb_000950_030--Hb_012707_010 Hb_004055_020 Hb_004055_020 Hb_000950_030--Hb_004055_020 Hb_000806_130 Hb_000806_130 Hb_000950_030--Hb_000806_130 Hb_001486_350 Hb_001486_350 Hb_000950_030--Hb_001486_350 Hb_006634_110 Hb_006634_110 Hb_000950_030--Hb_006634_110 Hb_003397_020 Hb_003397_020 Hb_033683_020--Hb_003397_020 Hb_033683_010 Hb_033683_010 Hb_033683_020--Hb_033683_010 Hb_033683_020--Hb_000950_030 Hb_033683_020--Hb_002157_270 Hb_057556_010 Hb_057556_010 Hb_033683_020--Hb_057556_010 Hb_000925_060--Hb_000950_030 Hb_000925_060--Hb_003397_020 Hb_000925_060--Hb_012707_010 Hb_000925_060--Hb_000236_230 Hb_005976_010 Hb_005976_010 Hb_000925_060--Hb_005976_010 Hb_048702_010--Hb_006634_110 Hb_100137_010 Hb_100137_010 Hb_048702_010--Hb_100137_010 Hb_002611_030 Hb_002611_030 Hb_048702_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_048702_010--Hb_017014_010 Hb_122636_010 Hb_122636_010 Hb_048702_010--Hb_122636_010 Hb_010577_010 Hb_010577_010 Hb_048702_010--Hb_010577_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0504167 0.0186753 0.46079 5.69455 0.698495 0.976708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205261 0.242153 0.371183 0.438322 3.30018

CAGE analysis