Hb_001366_110

Information

Type -
Description -
Location Contig1366: 114775-115734
Sequence    

Annotation

kegg
ID rcu:RCOM_1341430
description hypothetical protein
nr
ID XP_002515121.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMY2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341430 PE=4 SV=1
Gene Ontology
ID GO:0010413
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10075: 114775-115079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_158092_050 0.107719209 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
3 Hb_000236_230 0.1164745407 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
4 Hb_116701_010 0.1205787457 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
5 Hb_000130_350 0.1347417858 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
6 Hb_000108_180 0.1383809308 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
7 Hb_001541_060 0.1410640978 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000251_120 0.1533036938 - - O-acetyltransferase, putative [Ricinus communis]
9 Hb_150486_010 0.1546299601 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
10 Hb_000226_120 0.1552356829 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
11 Hb_000566_150 0.1619020241 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000428_040 0.1619383069 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
13 Hb_000173_240 0.1622330341 - - conserved hypothetical protein [Ricinus communis]
14 Hb_147745_010 0.1646537226 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
15 Hb_000165_020 0.165610521 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
16 Hb_008461_060 0.1658851767 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
17 Hb_001001_070 0.1728005357 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
18 Hb_166635_010 0.1759351612 - - ptm1, putative [Ricinus communis]
19 Hb_143748_010 0.1763393695 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
20 Hb_003177_040 0.1782546952 - - endo-1,4-beta-glucanase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001366_110 Hb_001366_110 Hb_158092_050 Hb_158092_050 Hb_001366_110--Hb_158092_050 Hb_000236_230 Hb_000236_230 Hb_001366_110--Hb_000236_230 Hb_116701_010 Hb_116701_010 Hb_001366_110--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_001366_110--Hb_000130_350 Hb_000108_180 Hb_000108_180 Hb_001366_110--Hb_000108_180 Hb_001541_060 Hb_001541_060 Hb_001366_110--Hb_001541_060 Hb_000173_240 Hb_000173_240 Hb_158092_050--Hb_000173_240 Hb_158092_050--Hb_116701_010 Hb_158092_050--Hb_000130_350 Hb_008461_060 Hb_008461_060 Hb_158092_050--Hb_008461_060 Hb_031284_060 Hb_031284_060 Hb_158092_050--Hb_031284_060 Hb_000193_320 Hb_000193_320 Hb_158092_050--Hb_000193_320 Hb_000428_040 Hb_000428_040 Hb_000236_230--Hb_000428_040 Hb_000251_120 Hb_000251_120 Hb_000236_230--Hb_000251_120 Hb_000236_230--Hb_116701_010 Hb_000236_230--Hb_000130_350 Hb_005183_130 Hb_005183_130 Hb_000236_230--Hb_005183_130 Hb_116701_010--Hb_000130_350 Hb_116701_010--Hb_000428_040 Hb_008762_010 Hb_008762_010 Hb_116701_010--Hb_008762_010 Hb_116701_010--Hb_000173_240 Hb_000130_350--Hb_031284_060 Hb_000130_350--Hb_000173_240 Hb_000130_350--Hb_008762_010 Hb_000130_350--Hb_000428_040 Hb_003177_040 Hb_003177_040 Hb_000108_180--Hb_003177_040 Hb_000108_180--Hb_000251_120 Hb_001001_070 Hb_001001_070 Hb_000108_180--Hb_001001_070 Hb_000108_180--Hb_001541_060 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_000108_180--Hb_005183_130 Hb_150486_010 Hb_150486_010 Hb_001541_060--Hb_150486_010 Hb_001541_060--Hb_000251_120 Hb_001541_060--Hb_003177_040 Hb_001541_060--Hb_000236_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.500478 0.723282 1.69194 25.7627 0.404912 0.249594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.159999 0.209723 2.15575 1.04688 16.5111

CAGE analysis