Hb_000925_060

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig925: 39297-39818
Sequence    

Annotation

kegg
ID tcc:TCM_001541
description GATA transcription factor 9-like protein
nr
ID XP_012079822.1
description PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
swissprot
ID O49743
description GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2 SV=1
trembl
ID A0A067K5Q9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15342 PE=4 SV=1
Gene Ontology
ID GO:0005488
description gata transcription factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000925_060 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
2 Hb_004627_010 0.1994408063 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000950_030 0.202072577 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
4 Hb_003397_020 0.2197540847 - - -
5 Hb_012707_010 0.227745121 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
6 Hb_000236_230 0.2305470977 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
7 Hb_005976_010 0.2411078634 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
8 Hb_000300_410 0.2428733568 - - hypothetical protein POPTR_0013s05860g [Populus trichocarpa]
9 Hb_001541_060 0.244377563 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002157_270 0.2461430059 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
11 Hb_001989_100 0.2467732981 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
12 Hb_033683_020 0.2504352164 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
13 Hb_007574_040 0.2505135047 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
14 Hb_000189_440 0.2508323967 - - hypothetical protein JCGZ_23470 [Jatropha curcas]
15 Hb_008695_220 0.2512162042 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
16 Hb_147745_010 0.251299005 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
17 Hb_002374_410 0.2524466108 - - zinc finger protein, putative [Ricinus communis]
18 Hb_002909_110 0.2533157277 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
19 Hb_029223_040 0.2546914506 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
20 Hb_000580_110 0.2547178928 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000925_060 Hb_000925_060 Hb_004627_010 Hb_004627_010 Hb_000925_060--Hb_004627_010 Hb_000950_030 Hb_000950_030 Hb_000925_060--Hb_000950_030 Hb_003397_020 Hb_003397_020 Hb_000925_060--Hb_003397_020 Hb_012707_010 Hb_012707_010 Hb_000925_060--Hb_012707_010 Hb_000236_230 Hb_000236_230 Hb_000925_060--Hb_000236_230 Hb_005976_010 Hb_005976_010 Hb_000925_060--Hb_005976_010 Hb_150486_010 Hb_150486_010 Hb_004627_010--Hb_150486_010 Hb_002157_270 Hb_002157_270 Hb_004627_010--Hb_002157_270 Hb_004627_010--Hb_000950_030 Hb_033683_020 Hb_033683_020 Hb_004627_010--Hb_033683_020 Hb_048702_010 Hb_048702_010 Hb_004627_010--Hb_048702_010 Hb_000950_030--Hb_002157_270 Hb_000950_030--Hb_012707_010 Hb_004055_020 Hb_004055_020 Hb_000950_030--Hb_004055_020 Hb_000806_130 Hb_000806_130 Hb_000950_030--Hb_000806_130 Hb_001486_350 Hb_001486_350 Hb_000950_030--Hb_001486_350 Hb_006634_110 Hb_006634_110 Hb_000950_030--Hb_006634_110 Hb_003397_020--Hb_033683_020 Hb_000115_370 Hb_000115_370 Hb_003397_020--Hb_000115_370 Hb_003397_020--Hb_000950_030 Hb_169018_010 Hb_169018_010 Hb_003397_020--Hb_169018_010 Hb_003397_020--Hb_004627_010 Hb_003397_020--Hb_004055_020 Hb_000696_070 Hb_000696_070 Hb_012707_010--Hb_000696_070 Hb_012707_010--Hb_001486_350 Hb_012707_010--Hb_000806_130 Hb_012707_010--Hb_002157_270 Hb_001989_100 Hb_001989_100 Hb_012707_010--Hb_001989_100 Hb_000428_040 Hb_000428_040 Hb_000236_230--Hb_000428_040 Hb_001366_110 Hb_001366_110 Hb_000236_230--Hb_001366_110 Hb_000251_120 Hb_000251_120 Hb_000236_230--Hb_000251_120 Hb_116701_010 Hb_116701_010 Hb_000236_230--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_000236_230--Hb_000130_350 Hb_005183_130 Hb_005183_130 Hb_000236_230--Hb_005183_130 Hb_000115_250 Hb_000115_250 Hb_005976_010--Hb_000115_250 Hb_000580_110 Hb_000580_110 Hb_005976_010--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_005976_010--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_005976_010--Hb_029223_040 Hb_000438_120 Hb_000438_120 Hb_005976_010--Hb_000438_120 Hb_005976_010--Hb_012707_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.211039 3.10885 0.100759 0.281059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.49169 0.168018 0.407256 1.66989

CAGE analysis