Hb_000115_250

Information

Type -
Description -
Location Contig115: 269564-271343
Sequence    

Annotation

kegg
ID tcc:TCM_009671
description Endonuclease 2, 2 isoform 1
nr
ID XP_012082106.1
description PREDICTED: endonuclease 2 [Jatropha curcas]
swissprot
ID Q9C9G4
description Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=1 SV=1
trembl
ID A0A067JZW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18343 PE=4 SV=1
Gene Ontology
ID GO:0003676
description endonuclease 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04541: 270147-271512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_250 0.0 - - PREDICTED: endonuclease 2 [Jatropha curcas]
2 Hb_005976_010 0.1027099104 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
3 Hb_008143_040 0.1670709498 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
4 Hb_004957_050 0.1675394052 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
5 Hb_000580_110 0.1705909142 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
6 Hb_007590_100 0.1719680437 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
7 Hb_029223_040 0.1726431767 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
8 Hb_001621_100 0.1726944984 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
9 Hb_003052_080 0.1775663837 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
10 Hb_002759_070 0.1786857644 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
11 Hb_000438_120 0.1870538261 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_000236_180 0.1913152265 - - serine hydroxymethyltransferase, putative [Ricinus communis]
13 Hb_000008_060 0.1926663083 - - protein binding protein, putative [Ricinus communis]
14 Hb_000975_170 0.1946205066 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
15 Hb_004032_110 0.1975960885 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
16 Hb_009545_030 0.2001241859 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
17 Hb_000077_310 0.2003831135 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
18 Hb_000417_380 0.200460099 - - SecY protein transport family protein [Theobroma cacao]
19 Hb_001546_010 0.2018591658 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012707_010 0.2022211648 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]

Gene co-expression network

sample Hb_000115_250 Hb_000115_250 Hb_005976_010 Hb_005976_010 Hb_000115_250--Hb_005976_010 Hb_008143_040 Hb_008143_040 Hb_000115_250--Hb_008143_040 Hb_004957_050 Hb_004957_050 Hb_000115_250--Hb_004957_050 Hb_000580_110 Hb_000580_110 Hb_000115_250--Hb_000580_110 Hb_007590_100 Hb_007590_100 Hb_000115_250--Hb_007590_100 Hb_029223_040 Hb_029223_040 Hb_000115_250--Hb_029223_040 Hb_005976_010--Hb_000580_110 Hb_000236_180 Hb_000236_180 Hb_005976_010--Hb_000236_180 Hb_005976_010--Hb_029223_040 Hb_000438_120 Hb_000438_120 Hb_005976_010--Hb_000438_120 Hb_012707_010 Hb_012707_010 Hb_005976_010--Hb_012707_010 Hb_007416_290 Hb_007416_290 Hb_008143_040--Hb_007416_290 Hb_009545_030 Hb_009545_030 Hb_008143_040--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_008143_040--Hb_007134_030 Hb_117639_010 Hb_117639_010 Hb_008143_040--Hb_117639_010 Hb_000057_100 Hb_000057_100 Hb_008143_040--Hb_000057_100 Hb_003052_080 Hb_003052_080 Hb_004957_050--Hb_003052_080 Hb_000392_540 Hb_000392_540 Hb_004957_050--Hb_000392_540 Hb_002374_510 Hb_002374_510 Hb_004957_050--Hb_002374_510 Hb_113766_010 Hb_113766_010 Hb_004957_050--Hb_113766_010 Hb_014361_010 Hb_014361_010 Hb_004957_050--Hb_014361_010 Hb_001008_080 Hb_001008_080 Hb_004957_050--Hb_001008_080 Hb_000580_110--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_006615_230 Hb_006615_230 Hb_007590_100--Hb_006615_230 Hb_187959_010 Hb_187959_010 Hb_007590_100--Hb_187959_010 Hb_007590_100--Hb_002495_030 Hb_004032_110 Hb_004032_110 Hb_007590_100--Hb_004032_110 Hb_007590_100--Hb_003052_080 Hb_098795_030 Hb_098795_030 Hb_007590_100--Hb_098795_030 Hb_030565_100 Hb_030565_100 Hb_029223_040--Hb_030565_100 Hb_029223_040--Hb_000236_180 Hb_000077_100 Hb_000077_100 Hb_029223_040--Hb_000077_100 Hb_134014_010 Hb_134014_010 Hb_029223_040--Hb_134014_010 Hb_003470_110 Hb_003470_110 Hb_029223_040--Hb_003470_110 Hb_000806_130 Hb_000806_130 Hb_029223_040--Hb_000806_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0224851 0.169051 0.364389 1.94199 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0515101 0.324096 0.223509 0.831146 1.49039

CAGE analysis