Hb_057556_010

Information

Type -
Description -
Location Contig57556: 667-1232
Sequence    

Annotation

kegg
ID rcu:RCOM_1438190
description Light-regulated protein precursor, putative
nr
ID XP_002512661.1
description Light-regulated protein precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFZ2
description Light-regulated protein, putative OS=Ricinus communis GN=RCOM_1438190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057556_010 0.0 - - Light-regulated protein precursor, putative [Ricinus communis]
2 Hb_001621_100 0.1673210825 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
3 Hb_001546_010 0.1905711177 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008695_220 0.1929262913 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
5 Hb_000950_030 0.1945615709 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
6 Hb_000580_110 0.1979482216 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
7 Hb_000417_400 0.1993949651 - - PREDICTED: ubiquitin domain-containing protein 1-like isoform X1 [Jatropha curcas]
8 Hb_002596_080 0.2000595736 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
9 Hb_000438_120 0.2011650318 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
10 Hb_000107_350 0.2023258917 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
11 Hb_004957_050 0.2046415194 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
12 Hb_004055_020 0.2109543361 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
13 Hb_033683_020 0.212069425 - - hypothetical protein POPTR_1072s00200g [Populus trichocarpa]
14 Hb_001195_380 0.2163154752 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
15 Hb_002701_090 0.2165293024 - - hypothetical protein POPTR_0017s13430g [Populus trichocarpa]
16 Hb_005976_010 0.2169816361 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
17 Hb_001832_170 0.2182706469 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
18 Hb_002157_270 0.21871729 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
19 Hb_001329_180 0.2202347457 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
20 Hb_000705_270 0.2213833335 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]

Gene co-expression network

sample Hb_057556_010 Hb_057556_010 Hb_001621_100 Hb_001621_100 Hb_057556_010--Hb_001621_100 Hb_001546_010 Hb_001546_010 Hb_057556_010--Hb_001546_010 Hb_008695_220 Hb_008695_220 Hb_057556_010--Hb_008695_220 Hb_000950_030 Hb_000950_030 Hb_057556_010--Hb_000950_030 Hb_000580_110 Hb_000580_110 Hb_057556_010--Hb_000580_110 Hb_000417_400 Hb_000417_400 Hb_057556_010--Hb_000417_400 Hb_002200_070 Hb_002200_070 Hb_001621_100--Hb_002200_070 Hb_000768_150 Hb_000768_150 Hb_001621_100--Hb_000768_150 Hb_001621_100--Hb_001546_010 Hb_003470_110 Hb_003470_110 Hb_001621_100--Hb_003470_110 Hb_001621_100--Hb_000580_110 Hb_002759_070 Hb_002759_070 Hb_001621_100--Hb_002759_070 Hb_000836_060 Hb_000836_060 Hb_001546_010--Hb_000836_060 Hb_012707_040 Hb_012707_040 Hb_001546_010--Hb_012707_040 Hb_001546_010--Hb_000768_150 Hb_000601_040 Hb_000601_040 Hb_001546_010--Hb_000601_040 Hb_009803_020 Hb_009803_020 Hb_001546_010--Hb_009803_020 Hb_007574_040 Hb_007574_040 Hb_008695_220--Hb_007574_040 Hb_008695_220--Hb_000950_030 Hb_017002_010 Hb_017002_010 Hb_008695_220--Hb_017002_010 Hb_000246_130 Hb_000246_130 Hb_008695_220--Hb_000246_130 Hb_000455_070 Hb_000455_070 Hb_008695_220--Hb_000455_070 Hb_014720_100 Hb_014720_100 Hb_008695_220--Hb_014720_100 Hb_002157_270 Hb_002157_270 Hb_000950_030--Hb_002157_270 Hb_012707_010 Hb_012707_010 Hb_000950_030--Hb_012707_010 Hb_004055_020 Hb_004055_020 Hb_000950_030--Hb_004055_020 Hb_000806_130 Hb_000806_130 Hb_000950_030--Hb_000806_130 Hb_001486_350 Hb_001486_350 Hb_000950_030--Hb_001486_350 Hb_006634_110 Hb_006634_110 Hb_000950_030--Hb_006634_110 Hb_000236_180 Hb_000236_180 Hb_000580_110--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_003052_080 Hb_003052_080 Hb_000417_400--Hb_003052_080 Hb_113766_010 Hb_113766_010 Hb_000417_400--Hb_113766_010 Hb_001143_210 Hb_001143_210 Hb_000417_400--Hb_001143_210 Hb_000417_400--Hb_002495_030 Hb_001404_070 Hb_001404_070 Hb_000417_400--Hb_001404_070 Hb_000933_170 Hb_000933_170 Hb_000417_400--Hb_000933_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35165 5.4755 18.4326 150.901 0.780114 8.51965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8681 19.3712 1.23906 32.0319 122.81

CAGE analysis