Hb_000417_400

Information

Type -
Description -
Location Contig417: 336982-338878
Sequence    

Annotation

kegg
ID rcu:RCOM_1251950
description DNA binding protein, putative
nr
ID XP_012091829.1
description PREDICTED: ubiquitin domain-containing protein 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q6DG43
description Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1
trembl
ID A0A067JMB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21611 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41287: 338359-338815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_400 0.0 - - PREDICTED: ubiquitin domain-containing protein 1-like isoform X1 [Jatropha curcas]
2 Hb_003052_080 0.132222935 desease resistance Gene Name: PRK PREDICTED: uridine-cytidine kinase C [Jatropha curcas]
3 Hb_113766_010 0.1417706525 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
4 Hb_001143_210 0.1461002892 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
5 Hb_002495_030 0.1531046814 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
6 Hb_001404_070 0.1544152862 - - sucrose synthase 4 [Hevea brasiliensis]
7 Hb_000933_170 0.1572265469 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
8 Hb_000463_120 0.1626954068 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
9 Hb_004957_050 0.1637263784 - - hypothetical protein POPTR_0010s12360g [Populus trichocarpa]
10 Hb_002374_510 0.1658829604 - - Esterase precursor, putative [Ricinus communis]
11 Hb_006992_010 0.1678031854 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_001008_080 0.1720294095 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
13 Hb_009122_010 0.1723502873 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_002750_040 0.1729459908 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
15 Hb_000077_100 0.1781200608 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
16 Hb_004032_110 0.1783013138 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
17 Hb_000309_070 0.1789515413 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
18 Hb_000103_300 0.179496236 - - PREDICTED: perakine reductase-like [Jatropha curcas]
19 Hb_002284_060 0.1804672919 - - sugar transporter, putative [Ricinus communis]
20 Hb_000580_110 0.1808229942 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000417_400 Hb_000417_400 Hb_003052_080 Hb_003052_080 Hb_000417_400--Hb_003052_080 Hb_113766_010 Hb_113766_010 Hb_000417_400--Hb_113766_010 Hb_001143_210 Hb_001143_210 Hb_000417_400--Hb_001143_210 Hb_002495_030 Hb_002495_030 Hb_000417_400--Hb_002495_030 Hb_001404_070 Hb_001404_070 Hb_000417_400--Hb_001404_070 Hb_000933_170 Hb_000933_170 Hb_000417_400--Hb_000933_170 Hb_004957_050 Hb_004957_050 Hb_003052_080--Hb_004957_050 Hb_003052_080--Hb_002495_030 Hb_000309_070 Hb_000309_070 Hb_003052_080--Hb_000309_070 Hb_003052_080--Hb_001404_070 Hb_007590_100 Hb_007590_100 Hb_003052_080--Hb_007590_100 Hb_002750_040 Hb_002750_040 Hb_003052_080--Hb_002750_040 Hb_000103_300 Hb_000103_300 Hb_113766_010--Hb_000103_300 Hb_002391_240 Hb_002391_240 Hb_113766_010--Hb_002391_240 Hb_026198_020 Hb_026198_020 Hb_113766_010--Hb_026198_020 Hb_000152_570 Hb_000152_570 Hb_113766_010--Hb_000152_570 Hb_002284_060 Hb_002284_060 Hb_113766_010--Hb_002284_060 Hb_113766_010--Hb_002750_040 Hb_149507_010 Hb_149507_010 Hb_001143_210--Hb_149507_010 Hb_001269_660 Hb_001269_660 Hb_001143_210--Hb_001269_660 Hb_010264_010 Hb_010264_010 Hb_001143_210--Hb_010264_010 Hb_006992_010 Hb_006992_010 Hb_001143_210--Hb_006992_010 Hb_001143_210--Hb_000933_170 Hb_002370_020 Hb_002370_020 Hb_001143_210--Hb_002370_020 Hb_098795_030 Hb_098795_030 Hb_002495_030--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_002495_030--Hb_006615_230 Hb_000580_110 Hb_000580_110 Hb_002495_030--Hb_000580_110 Hb_001008_080 Hb_001008_080 Hb_002495_030--Hb_001008_080 Hb_002495_030--Hb_007590_100 Hb_000959_130 Hb_000959_130 Hb_001404_070--Hb_000959_130 Hb_001404_070--Hb_002750_040 Hb_005545_110 Hb_005545_110 Hb_001404_070--Hb_005545_110 Hb_009456_010 Hb_009456_010 Hb_001404_070--Hb_009456_010 Hb_141194_020 Hb_141194_020 Hb_001404_070--Hb_141194_020 Hb_004667_030 Hb_004667_030 Hb_001404_070--Hb_004667_030 Hb_000933_170--Hb_001269_660 Hb_000910_060 Hb_000910_060 Hb_000933_170--Hb_000910_060 Hb_002518_230 Hb_002518_230 Hb_000933_170--Hb_002518_230 Hb_000933_170--Hb_149507_010 Hb_012395_060 Hb_012395_060 Hb_000933_170--Hb_012395_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.26474 1.32781 4.88284 0.156968 0.095133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372064 0.0974425 0 1.49242 3.49732

CAGE analysis