Hb_002126_010

Information

Type -
Description -
Location Contig2126: 15545-16037
Sequence    

Annotation

kegg
ID mtr:MTR_4g087690
description Ferrochelatase
nr
ID BAJ86634.1
description predicted protein [Hordeum vulgare subsp. vulgare]
swissprot
ID Q1XDD2
description Uncharacterized protein ycf17 OS=Pyropia yezoensis GN=ycf17 PE=3 SV=1
trembl
ID W5AKC3
description Ferrochelatase OS=Triticum aestivum PE=3 SV=1
Gene Ontology
ID GO:0005739
description ferrochelatase- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22023: 15421-26958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002126_010 0.0 - - predicted protein [Hordeum vulgare subsp. vulgare]
2 Hb_002477_010 0.1862436851 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001221_340 0.18627683 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
4 Hb_012022_050 0.1872323368 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
5 Hb_000258_140 0.1940716032 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007943_200 0.1970311451 - - Uncharacterized protein isoform 2 [Theobroma cacao]
7 Hb_007973_010 0.2053107104 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
8 Hb_000586_030 0.2054167691 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
9 Hb_003606_060 0.2057875263 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
10 Hb_158163_010 0.2174615542 - - protein binding protein, putative [Ricinus communis]
11 Hb_004303_040 0.2189178381 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
12 Hb_003305_020 0.2217288128 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
13 Hb_000661_070 0.2218312967 - - -
14 Hb_010815_020 0.2268616996 - - unnamed protein product [Vitis vinifera]
15 Hb_128196_020 0.2271682352 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
16 Hb_001894_070 0.2324226867 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X1 [Jatropha curcas]
17 Hb_000294_050 0.232516489 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
18 Hb_000288_020 0.2334553129 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003642_010 0.2342706677 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_001546_010 0.235301359 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002126_010 Hb_002126_010 Hb_002477_010 Hb_002477_010 Hb_002126_010--Hb_002477_010 Hb_001221_340 Hb_001221_340 Hb_002126_010--Hb_001221_340 Hb_012022_050 Hb_012022_050 Hb_002126_010--Hb_012022_050 Hb_000258_140 Hb_000258_140 Hb_002126_010--Hb_000258_140 Hb_007943_200 Hb_007943_200 Hb_002126_010--Hb_007943_200 Hb_007973_010 Hb_007973_010 Hb_002126_010--Hb_007973_010 Hb_002477_010--Hb_012022_050 Hb_000288_020 Hb_000288_020 Hb_002477_010--Hb_000288_020 Hb_002876_020 Hb_002876_020 Hb_002477_010--Hb_002876_020 Hb_003305_020 Hb_003305_020 Hb_002477_010--Hb_003305_020 Hb_032920_070 Hb_032920_070 Hb_002477_010--Hb_032920_070 Hb_009680_020 Hb_009680_020 Hb_002477_010--Hb_009680_020 Hb_001452_210 Hb_001452_210 Hb_001221_340--Hb_001452_210 Hb_001221_340--Hb_007973_010 Hb_002131_030 Hb_002131_030 Hb_001221_340--Hb_002131_030 Hb_002908_060 Hb_002908_060 Hb_001221_340--Hb_002908_060 Hb_000053_060 Hb_000053_060 Hb_001221_340--Hb_000053_060 Hb_001953_080 Hb_001953_080 Hb_001221_340--Hb_001953_080 Hb_007383_020 Hb_007383_020 Hb_012022_050--Hb_007383_020 Hb_012022_050--Hb_032920_070 Hb_001946_310 Hb_001946_310 Hb_012022_050--Hb_001946_310 Hb_000297_120 Hb_000297_120 Hb_012022_050--Hb_000297_120 Hb_005648_010 Hb_005648_010 Hb_012022_050--Hb_005648_010 Hb_000661_070 Hb_000661_070 Hb_000258_140--Hb_000661_070 Hb_000347_330 Hb_000347_330 Hb_000258_140--Hb_000347_330 Hb_000212_290 Hb_000212_290 Hb_000258_140--Hb_000212_290 Hb_000258_140--Hb_009680_020 Hb_000258_140--Hb_007973_010 Hb_019040_030 Hb_019040_030 Hb_000258_140--Hb_019040_030 Hb_006153_030 Hb_006153_030 Hb_007943_200--Hb_006153_030 Hb_007943_200--Hb_002477_010 Hb_005694_020 Hb_005694_020 Hb_007943_200--Hb_005694_020 Hb_143629_130 Hb_143629_130 Hb_007943_200--Hb_143629_130 Hb_148130_020 Hb_148130_020 Hb_007943_200--Hb_148130_020 Hb_002735_050 Hb_002735_050 Hb_007943_200--Hb_002735_050 Hb_052764_110 Hb_052764_110 Hb_007973_010--Hb_052764_110 Hb_004317_060 Hb_004317_060 Hb_007973_010--Hb_004317_060 Hb_008447_040 Hb_008447_040 Hb_007973_010--Hb_008447_040 Hb_004785_080 Hb_004785_080 Hb_007973_010--Hb_004785_080 Hb_000270_390 Hb_000270_390 Hb_007973_010--Hb_000270_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.80084 3.94977 21.9032 0.814123 13.0787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.35329 16.2961 2.34955 14.4154 21.5865

CAGE analysis