Hb_104835_010

Information

Type -
Description -
Location Contig104835: 2866-3350
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G108000g
description hypothetical protein
nr
ID XP_012073251.1
description PREDICTED: probable protein Pop3 [Jatropha curcas]
swissprot
ID Q9LUV2
description Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1
trembl
ID K7KTW4
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable protein pop3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104835_010 0.0 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
2 Hb_002542_050 0.1273348995 - - -
3 Hb_165396_010 0.1318506227 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_002042_040 0.150952097 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
5 Hb_002157_060 0.1644387437 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
6 Hb_000009_430 0.1702933752 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002965_130 0.1782416267 - - PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
8 Hb_000138_080 0.1845700727 - - conserved hypothetical protein [Ricinus communis]
9 Hb_016835_020 0.1920004304 - - unnamed protein product [Coffea canephora]
10 Hb_078081_020 0.192116421 - - -
11 Hb_000751_050 0.1927559457 - - PREDICTED: extensin, partial [Solanum lycopersicum]
12 Hb_001597_090 0.1937073582 - - -
13 Hb_000946_130 0.1941770786 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
14 Hb_000117_150 0.1952935519 - - hypothetical protein RCOM_0079810 [Ricinus communis]
15 Hb_000330_120 0.2017716615 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
16 Hb_146930_010 0.2034235763 - - -
17 Hb_000982_120 0.2036183026 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
18 Hb_167457_010 0.2050159912 - - hypothetical protein glysoja_045622, partial [Glycine soja]
19 Hb_007676_060 0.2085596605 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
20 Hb_003186_050 0.2099406015 - - -

Gene co-expression network

sample Hb_104835_010 Hb_104835_010 Hb_002542_050 Hb_002542_050 Hb_104835_010--Hb_002542_050 Hb_165396_010 Hb_165396_010 Hb_104835_010--Hb_165396_010 Hb_002042_040 Hb_002042_040 Hb_104835_010--Hb_002042_040 Hb_002157_060 Hb_002157_060 Hb_104835_010--Hb_002157_060 Hb_000009_430 Hb_000009_430 Hb_104835_010--Hb_000009_430 Hb_002965_130 Hb_002965_130 Hb_104835_010--Hb_002965_130 Hb_002542_050--Hb_165396_010 Hb_002542_050--Hb_002157_060 Hb_002542_050--Hb_002042_040 Hb_000946_130 Hb_000946_130 Hb_002542_050--Hb_000946_130 Hb_003186_050 Hb_003186_050 Hb_002542_050--Hb_003186_050 Hb_165396_010--Hb_002157_060 Hb_165396_010--Hb_002042_040 Hb_165396_010--Hb_000946_130 Hb_169960_010 Hb_169960_010 Hb_165396_010--Hb_169960_010 Hb_002042_040--Hb_002157_060 Hb_002042_040--Hb_000946_130 Hb_002042_040--Hb_169960_010 Hb_002157_060--Hb_000946_130 Hb_002157_060--Hb_169960_010 Hb_000014_200 Hb_000014_200 Hb_002157_060--Hb_000014_200 Hb_000751_060 Hb_000751_060 Hb_000009_430--Hb_000751_060 Hb_007676_060 Hb_007676_060 Hb_000009_430--Hb_007676_060 Hb_000120_880 Hb_000120_880 Hb_000009_430--Hb_000120_880 Hb_000254_060 Hb_000254_060 Hb_000009_430--Hb_000254_060 Hb_011849_020 Hb_011849_020 Hb_000009_430--Hb_011849_020 Hb_000982_120 Hb_000982_120 Hb_000009_430--Hb_000982_120 Hb_018202_060 Hb_018202_060 Hb_002965_130--Hb_018202_060 Hb_026284_010 Hb_026284_010 Hb_002965_130--Hb_026284_010 Hb_094439_030 Hb_094439_030 Hb_002965_130--Hb_094439_030 Hb_000330_120 Hb_000330_120 Hb_002965_130--Hb_000330_120 Hb_000946_030 Hb_000946_030 Hb_002965_130--Hb_000946_030 Hb_105134_010 Hb_105134_010 Hb_002965_130--Hb_105134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.148566 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.360099 0.290027

CAGE analysis