Hb_000946_130

Information

Type -
Description -
Location Contig946: 156801-157451
Sequence    

Annotation

kegg
ID csv:101228129
description purple acid phosphatase 17-like
nr
ID XP_010264418.1
description PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A5AYY0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039343 PE=4 SV=1
Gene Ontology
ID GO:0005488
description low quality protein: s-type anion channel slah3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_130 0.0 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
2 Hb_165396_010 0.0837078059 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_002542_050 0.0860938714 - - -
4 Hb_011476_010 0.1087968293 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_003186_050 0.1243339094 - - -
6 Hb_002157_060 0.1275152491 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
7 Hb_167457_010 0.1306225035 - - hypothetical protein glysoja_045622, partial [Glycine soja]
8 Hb_051410_010 0.1339915481 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
9 Hb_000649_090 0.1360120532 - - unnamed protein product [Vitis vinifera]
10 Hb_002042_040 0.1371778707 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
11 Hb_000914_010 0.1397681652 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
12 Hb_169960_010 0.1550631957 - - -
13 Hb_003450_010 0.1640979608 - - -
14 Hb_001248_140 0.1692971095 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
15 Hb_003688_120 0.1829142637 - - PREDICTED: uncharacterized protein LOC105350793 [Fragaria vesca subsp. vesca]
16 Hb_016835_020 0.1868089106 - - unnamed protein product [Coffea canephora]
17 Hb_004274_010 0.1869374743 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
18 Hb_014102_010 0.1919781374 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_104835_010 0.1941770786 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
20 Hb_001452_150 0.2047533417 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]

Gene co-expression network

sample Hb_000946_130 Hb_000946_130 Hb_165396_010 Hb_165396_010 Hb_000946_130--Hb_165396_010 Hb_002542_050 Hb_002542_050 Hb_000946_130--Hb_002542_050 Hb_011476_010 Hb_011476_010 Hb_000946_130--Hb_011476_010 Hb_003186_050 Hb_003186_050 Hb_000946_130--Hb_003186_050 Hb_002157_060 Hb_002157_060 Hb_000946_130--Hb_002157_060 Hb_167457_010 Hb_167457_010 Hb_000946_130--Hb_167457_010 Hb_165396_010--Hb_002542_050 Hb_165396_010--Hb_002157_060 Hb_002042_040 Hb_002042_040 Hb_165396_010--Hb_002042_040 Hb_104835_010 Hb_104835_010 Hb_165396_010--Hb_104835_010 Hb_169960_010 Hb_169960_010 Hb_165396_010--Hb_169960_010 Hb_002542_050--Hb_002157_060 Hb_002542_050--Hb_002042_040 Hb_002542_050--Hb_104835_010 Hb_002542_050--Hb_003186_050 Hb_011476_010--Hb_003186_050 Hb_011476_010--Hb_167457_010 Hb_004274_010 Hb_004274_010 Hb_011476_010--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_011476_010--Hb_001452_150 Hb_000914_010 Hb_000914_010 Hb_011476_010--Hb_000914_010 Hb_003427_040 Hb_003427_040 Hb_011476_010--Hb_003427_040 Hb_003186_050--Hb_167457_010 Hb_003186_050--Hb_004274_010 Hb_003186_050--Hb_001452_150 Hb_003186_050--Hb_003427_040 Hb_002157_060--Hb_002042_040 Hb_002157_060--Hb_169960_010 Hb_000014_200 Hb_000014_200 Hb_002157_060--Hb_000014_200 Hb_167457_010--Hb_004274_010 Hb_167457_010--Hb_001452_150 Hb_005843_060 Hb_005843_060 Hb_167457_010--Hb_005843_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.166678 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.139295 0.282946

CAGE analysis