Hb_165396_010

Information

Type -
Description -
Location Contig165396: 10-903
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165396_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_002542_050 0.0045965315 - - -
3 Hb_002157_060 0.0625601558 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
4 Hb_002042_040 0.0637862407 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
5 Hb_000946_130 0.0837078059 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
6 Hb_104835_010 0.1318506227 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
7 Hb_169960_010 0.1733056403 - - -
8 Hb_003186_050 0.1735425531 - - -
9 Hb_003450_010 0.1751584854 - - -
10 Hb_167457_010 0.1754102581 - - hypothetical protein glysoja_045622, partial [Glycine soja]
11 Hb_000009_430 0.1772373417 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011476_010 0.1790229536 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_016835_020 0.1890234161 - - unnamed protein product [Coffea canephora]
14 Hb_000117_150 0.2026955865 - - hypothetical protein RCOM_0079810 [Ricinus communis]
15 Hb_003858_080 0.2046514676 - - Germin-like protein 2 [Theobroma cacao]
16 Hb_000014_200 0.2065988577 - - PREDICTED: uncharacterized protein LOC105775355 [Gossypium raimondii]
17 Hb_000649_090 0.2070158164 - - unnamed protein product [Vitis vinifera]
18 Hb_051410_010 0.2155368232 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
19 Hb_001248_140 0.2156588547 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_003983_010 0.2200539755 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]

Gene co-expression network

sample Hb_165396_010 Hb_165396_010 Hb_002542_050 Hb_002542_050 Hb_165396_010--Hb_002542_050 Hb_002157_060 Hb_002157_060 Hb_165396_010--Hb_002157_060 Hb_002042_040 Hb_002042_040 Hb_165396_010--Hb_002042_040 Hb_000946_130 Hb_000946_130 Hb_165396_010--Hb_000946_130 Hb_104835_010 Hb_104835_010 Hb_165396_010--Hb_104835_010 Hb_169960_010 Hb_169960_010 Hb_165396_010--Hb_169960_010 Hb_002542_050--Hb_002157_060 Hb_002542_050--Hb_002042_040 Hb_002542_050--Hb_000946_130 Hb_002542_050--Hb_104835_010 Hb_003186_050 Hb_003186_050 Hb_002542_050--Hb_003186_050 Hb_002157_060--Hb_002042_040 Hb_002157_060--Hb_000946_130 Hb_002157_060--Hb_169960_010 Hb_000014_200 Hb_000014_200 Hb_002157_060--Hb_000014_200 Hb_002042_040--Hb_000946_130 Hb_002042_040--Hb_104835_010 Hb_002042_040--Hb_169960_010 Hb_011476_010 Hb_011476_010 Hb_000946_130--Hb_011476_010 Hb_000946_130--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_000946_130--Hb_167457_010 Hb_104835_010--Hb_002157_060 Hb_000009_430 Hb_000009_430 Hb_104835_010--Hb_000009_430 Hb_002965_130 Hb_002965_130 Hb_104835_010--Hb_002965_130 Hb_169960_010--Hb_000014_200 Hb_005207_040 Hb_005207_040 Hb_169960_010--Hb_005207_040 Hb_003688_120 Hb_003688_120 Hb_169960_010--Hb_003688_120 Hb_014102_010 Hb_014102_010 Hb_169960_010--Hb_014102_010 Hb_001144_030 Hb_001144_030 Hb_169960_010--Hb_001144_030 Hb_002559_020 Hb_002559_020 Hb_169960_010--Hb_002559_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0679881 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.074075 0.0931112

CAGE analysis