Hb_189208_030

Information

Type -
Description -
Location Contig189208: 12639-16806
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_189208_030 0.0 - - -
2 Hb_004393_040 0.0711546193 transcription factor TF Family: RAV PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 [Jatropha curcas]
3 Hb_087797_010 0.1513600166 - - kinase, putative [Ricinus communis]
4 Hb_003093_050 0.1540011639 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
5 Hb_000530_060 0.1578638216 - - -
6 Hb_029584_020 0.1583702669 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001089_120 0.161550301 - - PREDICTED: pectinesterase [Jatropha curcas]
8 Hb_003805_110 0.1620312388 - - PREDICTED: laccase-11-like [Jatropha curcas]
9 Hb_081344_010 0.1626652454 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
10 Hb_000433_040 0.1634423913 - - -
11 Hb_004818_010 0.1639405396 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
12 Hb_000504_220 0.1652632169 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
13 Hb_000152_300 0.1653748874 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
14 Hb_158597_010 0.1665266916 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
15 Hb_010666_020 0.1665819241 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
16 Hb_101097_010 0.1686432094 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_000608_160 0.1712305698 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
18 Hb_006718_030 0.1714796096 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
19 Hb_001140_110 0.1715626701 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
20 Hb_013405_240 0.1716940286 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]

Gene co-expression network

sample Hb_189208_030 Hb_189208_030 Hb_004393_040 Hb_004393_040 Hb_189208_030--Hb_004393_040 Hb_087797_010 Hb_087797_010 Hb_189208_030--Hb_087797_010 Hb_003093_050 Hb_003093_050 Hb_189208_030--Hb_003093_050 Hb_000530_060 Hb_000530_060 Hb_189208_030--Hb_000530_060 Hb_029584_020 Hb_029584_020 Hb_189208_030--Hb_029584_020 Hb_001089_120 Hb_001089_120 Hb_189208_030--Hb_001089_120 Hb_006718_030 Hb_006718_030 Hb_004393_040--Hb_006718_030 Hb_000140_040 Hb_000140_040 Hb_004393_040--Hb_000140_040 Hb_180094_010 Hb_180094_010 Hb_004393_040--Hb_180094_010 Hb_003805_110 Hb_003805_110 Hb_004393_040--Hb_003805_110 Hb_000152_300 Hb_000152_300 Hb_004393_040--Hb_000152_300 Hb_000261_390 Hb_000261_390 Hb_087797_010--Hb_000261_390 Hb_007044_020 Hb_007044_020 Hb_087797_010--Hb_007044_020 Hb_001832_180 Hb_001832_180 Hb_087797_010--Hb_001832_180 Hb_000009_470 Hb_000009_470 Hb_087797_010--Hb_000009_470 Hb_001289_050 Hb_001289_050 Hb_087797_010--Hb_001289_050 Hb_000282_100 Hb_000282_100 Hb_087797_010--Hb_000282_100 Hb_004818_010 Hb_004818_010 Hb_003093_050--Hb_004818_010 Hb_003093_050--Hb_029584_020 Hb_000629_110 Hb_000629_110 Hb_003093_050--Hb_000629_110 Hb_004143_080 Hb_004143_080 Hb_003093_050--Hb_004143_080 Hb_003093_050--Hb_000530_060 Hb_000704_020 Hb_000704_020 Hb_003093_050--Hb_000704_020 Hb_000530_060--Hb_029584_020 Hb_000530_060--Hb_001089_120 Hb_000530_060--Hb_003805_110 Hb_000504_220 Hb_000504_220 Hb_000530_060--Hb_000504_220 Hb_000530_060--Hb_004818_010 Hb_029584_020--Hb_003805_110 Hb_081344_010 Hb_081344_010 Hb_029584_020--Hb_081344_010 Hb_000433_040 Hb_000433_040 Hb_029584_020--Hb_000433_040 Hb_029584_020--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_029584_020--Hb_010666_020 Hb_001089_120--Hb_000504_220 Hb_001089_120--Hb_029584_020 Hb_000608_160 Hb_000608_160 Hb_001089_120--Hb_000608_160 Hb_003251_010 Hb_003251_010 Hb_001089_120--Hb_003251_010 Hb_001089_120--Hb_003805_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0180839 0 0.0420256 0.0425473 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.268781

CAGE analysis