Hb_004393_040

Information

Type transcription factor
Description TF Family: RAV
Location Contig4393: 56527-57581
Sequence    

Annotation

kegg
ID rcu:RCOM_0143290
description DNA-binding protein RAV1, putative
nr
ID XP_012071489.1
description PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 [Jatropha curcas]
swissprot
ID Q9C688
description AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1
trembl
ID A0A067KR20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04019 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ap2 erf and b3 domain-containing transcription factor at1g50680-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42591: 57080-57283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004393_040 0.0 transcription factor TF Family: RAV PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 [Jatropha curcas]
2 Hb_189208_030 0.0711546193 - - -
3 Hb_006718_030 0.1512926492 - - ATPase, F1 complex, gamma subunit protein [Theobroma cacao]
4 Hb_000140_040 0.1710117763 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
5 Hb_180094_010 0.1733264706 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
6 Hb_003805_110 0.1751229356 - - PREDICTED: laccase-11-like [Jatropha curcas]
7 Hb_000152_300 0.1751887102 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
8 Hb_127349_020 0.1752424441 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_007534_080 0.1759834836 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
10 Hb_000101_340 0.1762004686 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis]
11 Hb_001097_110 0.1765390582 - - gibberellin 20-oxidase, putative [Ricinus communis]
12 Hb_081344_010 0.1771053353 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
13 Hb_003647_070 0.1771472211 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
14 Hb_000433_040 0.1774534593 - - -
15 Hb_029584_020 0.1778260986 - - conserved hypothetical protein [Ricinus communis]
16 Hb_046825_010 0.177841988 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
17 Hb_005474_070 0.1778479836 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
18 Hb_010666_020 0.1782481878 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
19 Hb_003093_050 0.1790623208 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
20 Hb_045260_010 0.1794920352 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004393_040 Hb_004393_040 Hb_189208_030 Hb_189208_030 Hb_004393_040--Hb_189208_030 Hb_006718_030 Hb_006718_030 Hb_004393_040--Hb_006718_030 Hb_000140_040 Hb_000140_040 Hb_004393_040--Hb_000140_040 Hb_180094_010 Hb_180094_010 Hb_004393_040--Hb_180094_010 Hb_003805_110 Hb_003805_110 Hb_004393_040--Hb_003805_110 Hb_000152_300 Hb_000152_300 Hb_004393_040--Hb_000152_300 Hb_087797_010 Hb_087797_010 Hb_189208_030--Hb_087797_010 Hb_003093_050 Hb_003093_050 Hb_189208_030--Hb_003093_050 Hb_000530_060 Hb_000530_060 Hb_189208_030--Hb_000530_060 Hb_029584_020 Hb_029584_020 Hb_189208_030--Hb_029584_020 Hb_001089_120 Hb_001089_120 Hb_189208_030--Hb_001089_120 Hb_002329_050 Hb_002329_050 Hb_006718_030--Hb_002329_050 Hb_000883_080 Hb_000883_080 Hb_006718_030--Hb_000883_080 Hb_005483_040 Hb_005483_040 Hb_006718_030--Hb_005483_040 Hb_000268_050 Hb_000268_050 Hb_006718_030--Hb_000268_050 Hb_000363_070 Hb_000363_070 Hb_006718_030--Hb_000363_070 Hb_006718_030--Hb_000140_040 Hb_000140_040--Hb_180094_010 Hb_127349_020 Hb_127349_020 Hb_000140_040--Hb_127349_020 Hb_001097_110 Hb_001097_110 Hb_000140_040--Hb_001097_110 Hb_000140_040--Hb_000152_300 Hb_046825_010 Hb_046825_010 Hb_000140_040--Hb_046825_010 Hb_007534_080 Hb_007534_080 Hb_000140_040--Hb_007534_080 Hb_180094_010--Hb_127349_020 Hb_180094_010--Hb_046825_010 Hb_180094_010--Hb_000152_300 Hb_010666_020 Hb_010666_020 Hb_180094_010--Hb_010666_020 Hb_000433_040 Hb_000433_040 Hb_180094_010--Hb_000433_040 Hb_003805_110--Hb_029584_020 Hb_003805_110--Hb_000530_060 Hb_003058_150 Hb_003058_150 Hb_003805_110--Hb_003058_150 Hb_001140_110 Hb_001140_110 Hb_003805_110--Hb_001140_110 Hb_003805_110--Hb_001097_110 Hb_081344_010 Hb_081344_010 Hb_003805_110--Hb_081344_010 Hb_000152_300--Hb_000433_040 Hb_000152_300--Hb_081344_010 Hb_000152_300--Hb_010666_020 Hb_000152_300--Hb_127349_020 Hb_000152_300--Hb_029584_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0530192 0 0.100707 0.16004 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.626578

CAGE analysis