Hb_010620_030

Information

Type -
Description -
Location Contig10620: 19692-24701
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00350g
description hypothetical protein
nr
ID BAE43642.1
description beta-amyrin synthase [Euphorbia tirucalli]
swissprot
ID A8CDT2
description Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1
trembl
ID Q401R6
description Terpene cyclase/mutase family member OS=Euphorbia tirucalli GN=EtAS PE=2 SV=1
Gene Ontology
ID GO:0042300
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010620_030 0.0 - - beta-amyrin synthase [Euphorbia tirucalli]
2 Hb_001124_230 0.130853851 - - PREDICTED: divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic [Jatropha curcas]
3 Hb_000552_010 0.1427453845 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
4 Hb_006483_120 0.1440633873 - - DNA binding protein, putative [Ricinus communis]
5 Hb_003849_070 0.1467558131 - - PREDICTED: uncharacterized protein LOC105644690 [Jatropha curcas]
6 Hb_000056_110 0.1502871064 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
7 Hb_000439_020 0.1505842528 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
8 Hb_000152_530 0.1506904122 - - hypothetical protein SELMODRAFT_231485 [Selaginella moellendorffii]
9 Hb_000616_030 0.15441929 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
10 Hb_000920_100 0.1566718667 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_016924_010 0.1570362593 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004712_200 0.1620568425 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
13 Hb_000300_680 0.16617126 - - PREDICTED: uncharacterized protein LOC105632625 isoform X1 [Jatropha curcas]
14 Hb_046117_030 0.1666797259 - - sialyltransferase, putative [Ricinus communis]
15 Hb_000005_370 0.1668018284 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
16 Hb_002814_010 0.1668193251 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
17 Hb_034168_050 0.1676687593 - - Photosystem I assembly protein Ycf3 [Medicago truncatula]
18 Hb_000392_210 0.1687369017 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
19 Hb_005977_060 0.171902316 - - conserved hypothetical protein [Ricinus communis]
20 Hb_042463_010 0.1719304883 - - cytochrome c oxidase subunit 2-1 (mitochondrion) (mitochondrion) [Brassica juncea var. tumida]

Gene co-expression network

sample Hb_010620_030 Hb_010620_030 Hb_001124_230 Hb_001124_230 Hb_010620_030--Hb_001124_230 Hb_000552_010 Hb_000552_010 Hb_010620_030--Hb_000552_010 Hb_006483_120 Hb_006483_120 Hb_010620_030--Hb_006483_120 Hb_003849_070 Hb_003849_070 Hb_010620_030--Hb_003849_070 Hb_000056_110 Hb_000056_110 Hb_010620_030--Hb_000056_110 Hb_000439_020 Hb_000439_020 Hb_010620_030--Hb_000439_020 Hb_000616_030 Hb_000616_030 Hb_001124_230--Hb_000616_030 Hb_000005_370 Hb_000005_370 Hb_001124_230--Hb_000005_370 Hb_000612_090 Hb_000612_090 Hb_001124_230--Hb_000612_090 Hb_008112_020 Hb_008112_020 Hb_001124_230--Hb_008112_020 Hb_000300_680 Hb_000300_680 Hb_001124_230--Hb_000300_680 Hb_000684_400 Hb_000684_400 Hb_001124_230--Hb_000684_400 Hb_001832_170 Hb_001832_170 Hb_000552_010--Hb_001832_170 Hb_002400_300 Hb_002400_300 Hb_000552_010--Hb_002400_300 Hb_000920_100 Hb_000920_100 Hb_000552_010--Hb_000920_100 Hb_000176_050 Hb_000176_050 Hb_000552_010--Hb_000176_050 Hb_001221_240 Hb_001221_240 Hb_000552_010--Hb_001221_240 Hb_182651_020 Hb_182651_020 Hb_006483_120--Hb_182651_020 Hb_006483_120--Hb_000439_020 Hb_042463_010 Hb_042463_010 Hb_006483_120--Hb_042463_010 Hb_000574_330 Hb_000574_330 Hb_006483_120--Hb_000574_330 Hb_007793_030 Hb_007793_030 Hb_006483_120--Hb_007793_030 Hb_016924_010 Hb_016924_010 Hb_003849_070--Hb_016924_010 Hb_003849_070--Hb_000005_370 Hb_001252_030 Hb_001252_030 Hb_003849_070--Hb_001252_030 Hb_032631_020 Hb_032631_020 Hb_003849_070--Hb_032631_020 Hb_001999_070 Hb_001999_070 Hb_003849_070--Hb_001999_070 Hb_020141_030 Hb_020141_030 Hb_003849_070--Hb_020141_030 Hb_034507_050 Hb_034507_050 Hb_000056_110--Hb_034507_050 Hb_000787_210 Hb_000787_210 Hb_000056_110--Hb_000787_210 Hb_010174_100 Hb_010174_100 Hb_000056_110--Hb_010174_100 Hb_000056_110--Hb_001252_030 Hb_000056_110--Hb_020141_030 Hb_001677_040 Hb_001677_040 Hb_000056_110--Hb_001677_040 Hb_004712_200 Hb_004712_200 Hb_000439_020--Hb_004712_200 Hb_000439_020--Hb_010174_100 Hb_000439_020--Hb_000552_010 Hb_000439_020--Hb_042463_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0729099 0.11293 0.218068 0.54393 0.0205445 0.0497069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0124832 0.0238443 0.143658 1.06365

CAGE analysis