Hb_000237_210

Information

Type -
Description -
Location Contig237: 282377-282800
Sequence    

Annotation

kegg
ID rcu:RCOM_1448810
description hypothetical protein
nr
ID XP_002512953.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH94
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1448810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006637_080 0.2171579486 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
3 Hb_007313_060 0.2189863536 - - PREDICTED: paramyosin [Jatropha curcas]
4 Hb_000172_380 0.2202101136 - - small heat-shock protein, putative [Ricinus communis]
5 Hb_000599_230 0.2254974458 - - -
6 Hb_000505_080 0.2308487799 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
7 Hb_002681_080 0.2348768912 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
8 Hb_004445_020 0.2433108421 - - hypothetical protein JCGZ_13166 [Jatropha curcas]
9 Hb_000395_090 0.24437623 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
10 Hb_007413_030 0.2447962214 - - kinase, putative [Ricinus communis]
11 Hb_003427_080 0.2459701159 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
12 Hb_002740_190 0.2482117984 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
13 Hb_002518_110 0.2493212358 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
14 Hb_007054_070 0.2516897606 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
15 Hb_008092_080 0.2518056137 - - elongation factor ts, putative [Ricinus communis]
16 Hb_003025_140 0.2528538801 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000402_170 0.2530260086 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]
18 Hb_000296_080 0.2537779495 - - PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Jatropha curcas]
19 Hb_001220_050 0.2559250431 - - DNA-damage-inducible protein f, putative [Ricinus communis]
20 Hb_054865_060 0.2562013172 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000237_210 Hb_000237_210 Hb_006637_080 Hb_006637_080 Hb_000237_210--Hb_006637_080 Hb_007313_060 Hb_007313_060 Hb_000237_210--Hb_007313_060 Hb_000172_380 Hb_000172_380 Hb_000237_210--Hb_000172_380 Hb_000599_230 Hb_000599_230 Hb_000237_210--Hb_000599_230 Hb_000505_080 Hb_000505_080 Hb_000237_210--Hb_000505_080 Hb_002681_080 Hb_002681_080 Hb_000237_210--Hb_002681_080 Hb_003777_020 Hb_003777_020 Hb_006637_080--Hb_003777_020 Hb_002027_410 Hb_002027_410 Hb_006637_080--Hb_002027_410 Hb_002685_060 Hb_002685_060 Hb_006637_080--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_006637_080--Hb_002282_070 Hb_036790_120 Hb_036790_120 Hb_006637_080--Hb_036790_120 Hb_016461_030 Hb_016461_030 Hb_006637_080--Hb_016461_030 Hb_000395_090 Hb_000395_090 Hb_007313_060--Hb_000395_090 Hb_008092_080 Hb_008092_080 Hb_007313_060--Hb_008092_080 Hb_003427_080 Hb_003427_080 Hb_007313_060--Hb_003427_080 Hb_000053_120 Hb_000053_120 Hb_007313_060--Hb_000053_120 Hb_024714_080 Hb_024714_080 Hb_007313_060--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_007313_060--Hb_003077_130 Hb_000059_270 Hb_000059_270 Hb_000172_380--Hb_000059_270 Hb_004735_020 Hb_004735_020 Hb_000172_380--Hb_004735_020 Hb_001080_070 Hb_001080_070 Hb_000172_380--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000172_380--Hb_000114_150 Hb_001220_050 Hb_001220_050 Hb_000172_380--Hb_001220_050 Hb_009020_040 Hb_009020_040 Hb_000172_380--Hb_009020_040 Hb_000599_230--Hb_004735_020 Hb_000599_230--Hb_002681_080 Hb_002740_190 Hb_002740_190 Hb_000599_230--Hb_002740_190 Hb_010757_030 Hb_010757_030 Hb_000599_230--Hb_010757_030 Hb_000479_170 Hb_000479_170 Hb_000599_230--Hb_000479_170 Hb_025477_050 Hb_025477_050 Hb_000599_230--Hb_025477_050 Hb_000815_230 Hb_000815_230 Hb_000505_080--Hb_000815_230 Hb_002471_110 Hb_002471_110 Hb_000505_080--Hb_002471_110 Hb_001675_050 Hb_001675_050 Hb_000505_080--Hb_001675_050 Hb_010344_030 Hb_010344_030 Hb_000505_080--Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_000505_080--Hb_006006_060 Hb_002053_050 Hb_002053_050 Hb_000505_080--Hb_002053_050 Hb_000521_090 Hb_000521_090 Hb_002681_080--Hb_000521_090 Hb_002681_080--Hb_010757_030 Hb_007002_010 Hb_007002_010 Hb_002681_080--Hb_007002_010 Hb_002681_080--Hb_003077_130 Hb_000352_220 Hb_000352_220 Hb_002681_080--Hb_000352_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7804 0.817772 4.92537 6.72987 1.09728 10.7478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.11405 2.61259 2.1164 1.18585 30.3918

CAGE analysis