Hb_001675_050

Information

Type -
Description -
Location Contig1675: 40289-43095
Sequence    

Annotation

kegg
ID rcu:RCOM_1493970
description hypothetical protein
nr
ID XP_012073367.1
description PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06297 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15507: 40335-43111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_050 0.0 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
2 Hb_001976_060 0.1208635499 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
3 Hb_000505_080 0.1306224805 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
4 Hb_003777_250 0.1312475029 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming]-like [Jatropha curcas]
5 Hb_012165_020 0.1455702353 - - hypothetical protein POPTR_0007s05770g [Populus trichocarpa]
6 Hb_000815_230 0.145843748 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001623_080 0.1476884746 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_004735_020 0.1509033955 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
9 Hb_005288_110 0.1549062728 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
10 Hb_005063_080 0.1575870579 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
11 Hb_005375_110 0.161709956 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
12 Hb_000521_090 0.1621792957 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
13 Hb_010984_020 0.1622194357 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
14 Hb_000011_220 0.1641124042 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
15 Hb_006006_060 0.1664156638 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
16 Hb_000977_290 0.1667675913 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
17 Hb_002636_040 0.1687166214 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
18 Hb_001140_170 0.169975943 - - PREDICTED: remorin [Jatropha curcas]
19 Hb_000347_190 0.1704444754 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
20 Hb_010344_030 0.1704480663 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001675_050 Hb_001675_050 Hb_001976_060 Hb_001976_060 Hb_001675_050--Hb_001976_060 Hb_000505_080 Hb_000505_080 Hb_001675_050--Hb_000505_080 Hb_003777_250 Hb_003777_250 Hb_001675_050--Hb_003777_250 Hb_012165_020 Hb_012165_020 Hb_001675_050--Hb_012165_020 Hb_000815_230 Hb_000815_230 Hb_001675_050--Hb_000815_230 Hb_001623_080 Hb_001623_080 Hb_001675_050--Hb_001623_080 Hb_001976_060--Hb_001623_080 Hb_001049_150 Hb_001049_150 Hb_001976_060--Hb_001049_150 Hb_000062_400 Hb_000062_400 Hb_001976_060--Hb_000062_400 Hb_000117_030 Hb_000117_030 Hb_001976_060--Hb_000117_030 Hb_004899_340 Hb_004899_340 Hb_001976_060--Hb_004899_340 Hb_000505_080--Hb_000815_230 Hb_002471_110 Hb_002471_110 Hb_000505_080--Hb_002471_110 Hb_010344_030 Hb_010344_030 Hb_000505_080--Hb_010344_030 Hb_006006_060 Hb_006006_060 Hb_000505_080--Hb_006006_060 Hb_002053_050 Hb_002053_050 Hb_000505_080--Hb_002053_050 Hb_005288_110 Hb_005288_110 Hb_003777_250--Hb_005288_110 Hb_003777_250--Hb_006006_060 Hb_005063_080 Hb_005063_080 Hb_003777_250--Hb_005063_080 Hb_004710_020 Hb_004710_020 Hb_003777_250--Hb_004710_020 Hb_000328_050 Hb_000328_050 Hb_003777_250--Hb_000328_050 Hb_012165_020--Hb_005288_110 Hb_000599_230 Hb_000599_230 Hb_012165_020--Hb_000599_230 Hb_007313_100 Hb_007313_100 Hb_012165_020--Hb_007313_100 Hb_002681_080 Hb_002681_080 Hb_012165_020--Hb_002681_080 Hb_002276_070 Hb_002276_070 Hb_012165_020--Hb_002276_070 Hb_000815_230--Hb_002053_050 Hb_003682_070 Hb_003682_070 Hb_000815_230--Hb_003682_070 Hb_000000_310 Hb_000000_310 Hb_000815_230--Hb_000000_310 Hb_000815_230--Hb_010344_030 Hb_004735_020 Hb_004735_020 Hb_000815_230--Hb_004735_020 Hb_001623_080--Hb_001049_150 Hb_001623_080--Hb_004899_340 Hb_000959_300 Hb_000959_300 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7861 8.63533 20.4254 52.7792 16.7854 22.4772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48617 2.87376 2.24656 11.0049 79.4473

CAGE analysis