Hb_004710_020

Information

Type -
Description -
Location Contig4710: 24576-28058
Sequence    

Annotation

kegg
ID rcu:RCOM_1662770
description 2-deoxyglucose-6-phosphate phosphatase, putative
nr
ID XP_002515825.1
description 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RQ06
description 2-deoxyglucose-6-phosphate phosphatase, putative OS=Ricinus communis GN=RCOM_1662770 PE=4 SV=1
Gene Ontology
ID GO:0009507
description haloacid dehalogenase-like hydrolase domain-containing protein at3g48420-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44266: 6103-44357 , PASA_asmbl_44267: 26940-44241 , PASA_asmbl_44268: 13847-24832 , PASA_asmbl_44269: 23572-23988
cDNA
(Sanger)
(ID:Location)		 013_K14.ab1: 6103-26744

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004710_020 0.0 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
2 Hb_000496_130 0.0954498884 - - PREDICTED: fructokinase-1 [Jatropha curcas]
3 Hb_000085_070 0.09960086 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000454_100 0.102777051 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_002828_060 0.1052964381 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
6 Hb_006006_060 0.1066511945 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
7 Hb_001348_090 0.1072807346 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
8 Hb_000265_070 0.1094836576 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
9 Hb_000645_180 0.1098024646 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
10 Hb_000108_020 0.1103043436 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
11 Hb_002249_080 0.1104079372 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
12 Hb_010984_020 0.1111695907 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
13 Hb_002005_040 0.1123354532 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_032631_070 0.1150665387 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
15 Hb_009288_040 0.1152825986 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
16 Hb_000696_190 0.1173991707 - - PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1 [Jatropha curcas]
17 Hb_000579_040 0.1176604049 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
18 Hb_001140_180 0.1182440258 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
19 Hb_003355_010 0.1198429623 - - Heat shock 70 kDa protein, putative [Ricinus communis]
20 Hb_002902_140 0.1203562475 - - PREDICTED: probable prolyl 4-hydroxylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_004710_020 Hb_004710_020 Hb_000496_130 Hb_000496_130 Hb_004710_020--Hb_000496_130 Hb_000085_070 Hb_000085_070 Hb_004710_020--Hb_000085_070 Hb_000454_100 Hb_000454_100 Hb_004710_020--Hb_000454_100 Hb_002828_060 Hb_002828_060 Hb_004710_020--Hb_002828_060 Hb_006006_060 Hb_006006_060 Hb_004710_020--Hb_006006_060 Hb_001348_090 Hb_001348_090 Hb_004710_020--Hb_001348_090 Hb_003355_010 Hb_003355_010 Hb_000496_130--Hb_003355_010 Hb_001143_100 Hb_001143_100 Hb_000496_130--Hb_001143_100 Hb_007943_150 Hb_007943_150 Hb_000496_130--Hb_007943_150 Hb_025194_090 Hb_025194_090 Hb_000496_130--Hb_025194_090 Hb_000510_190 Hb_000510_190 Hb_000496_130--Hb_000510_190 Hb_000108_020 Hb_000108_020 Hb_000085_070--Hb_000108_020 Hb_000309_020 Hb_000309_020 Hb_000085_070--Hb_000309_020 Hb_000480_040 Hb_000480_040 Hb_000085_070--Hb_000480_040 Hb_002542_160 Hb_002542_160 Hb_000085_070--Hb_002542_160 Hb_000085_070--Hb_003355_010 Hb_000220_210 Hb_000220_210 Hb_000085_070--Hb_000220_210 Hb_002044_160 Hb_002044_160 Hb_000454_100--Hb_002044_160 Hb_000696_190 Hb_000696_190 Hb_000454_100--Hb_000696_190 Hb_158092_100 Hb_158092_100 Hb_000454_100--Hb_158092_100 Hb_002005_040 Hb_002005_040 Hb_000454_100--Hb_002005_040 Hb_000454_100--Hb_000496_130 Hb_003490_060 Hb_003490_060 Hb_002828_060--Hb_003490_060 Hb_068079_010 Hb_068079_010 Hb_002828_060--Hb_068079_010 Hb_000482_050 Hb_000482_050 Hb_002828_060--Hb_000482_050 Hb_002828_060--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_002828_060--Hb_002249_080 Hb_001140_180 Hb_001140_180 Hb_002828_060--Hb_001140_180 Hb_000200_350 Hb_000200_350 Hb_006006_060--Hb_000200_350 Hb_022693_130 Hb_022693_130 Hb_006006_060--Hb_022693_130 Hb_000388_150 Hb_000388_150 Hb_006006_060--Hb_000388_150 Hb_010344_030 Hb_010344_030 Hb_006006_060--Hb_010344_030 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_010984_020 Hb_010984_020 Hb_006006_060--Hb_010984_020 Hb_001348_090--Hb_002005_040 Hb_002374_450 Hb_002374_450 Hb_001348_090--Hb_002374_450 Hb_004055_160 Hb_004055_160 Hb_001348_090--Hb_004055_160 Hb_004242_170 Hb_004242_170 Hb_001348_090--Hb_004242_170 Hb_024677_010 Hb_024677_010 Hb_001348_090--Hb_024677_010 Hb_000441_050 Hb_000441_050 Hb_001348_090--Hb_000441_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03943 1.12663 4.80802 3.92044 1.13231 1.90575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.869947 0.911658 0.533757 2.55039 6.94209

CAGE analysis