Hb_000709_020

Information

Type -
Description -
Location Contig709: 47589-53088
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000709_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_163663_010 0.0517028527 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
3 Hb_004018_010 0.107592817 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
4 Hb_087426_010 0.1223749122 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
5 Hb_056550_010 0.1904081283 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
6 Hb_000351_150 0.1994153475 - - Wall-associated kinase 2, putative [Theobroma cacao]
7 Hb_000101_280 0.2004662622 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
8 Hb_012807_090 0.2836527466 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
9 Hb_004951_050 0.2838726459 - - conserved hypothetical protein [Ricinus communis]
10 Hb_014929_010 0.2840502206 - - -
11 Hb_000143_070 0.2845982928 - - -
12 Hb_000300_460 0.285204467 - - Mavicyanin, putative [Ricinus communis]
13 Hb_003279_010 0.2855470025 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_121954_010 0.2855772383 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
15 Hb_074822_010 0.2855859244 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
16 Hb_005379_010 0.2857900139 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000646_030 0.2858532565 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_025662_020 0.2858572311 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003797_030 0.2858736519 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000329_460 0.2922222241 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]

Gene co-expression network

sample Hb_000709_020 Hb_000709_020 Hb_163663_010 Hb_163663_010 Hb_000709_020--Hb_163663_010 Hb_004018_010 Hb_004018_010 Hb_000709_020--Hb_004018_010 Hb_087426_010 Hb_087426_010 Hb_000709_020--Hb_087426_010 Hb_056550_010 Hb_056550_010 Hb_000709_020--Hb_056550_010 Hb_000351_150 Hb_000351_150 Hb_000709_020--Hb_000351_150 Hb_000101_280 Hb_000101_280 Hb_000709_020--Hb_000101_280 Hb_163663_010--Hb_087426_010 Hb_163663_010--Hb_004018_010 Hb_163663_010--Hb_000101_280 Hb_163663_010--Hb_056550_010 Hb_163663_010--Hb_000351_150 Hb_004018_010--Hb_087426_010 Hb_004018_010--Hb_056550_010 Hb_004018_010--Hb_000351_150 Hb_012807_090 Hb_012807_090 Hb_004018_010--Hb_012807_090 Hb_087426_010--Hb_056550_010 Hb_087426_010--Hb_000351_150 Hb_087426_010--Hb_000101_280 Hb_056550_010--Hb_000351_150 Hb_075722_010 Hb_075722_010 Hb_056550_010--Hb_075722_010 Hb_000351_150--Hb_075722_010 Hb_037790_010 Hb_037790_010 Hb_000101_280--Hb_037790_010 Hb_001160_010 Hb_001160_010 Hb_000101_280--Hb_001160_010 Hb_041476_010 Hb_041476_010 Hb_000101_280--Hb_041476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00512288 0 0 0 0 0.00375785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0158644

CAGE analysis