Hb_004018_010

Information

Type -
Description -
Location Contig4018: 13666-18700
Sequence    

Annotation

kegg
ID cmo:103499741
description uncharacterized LOC103499741
nr
ID XP_012466212.1
description PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061FZ93
description Uncharacterized protein OS=Theobroma cacao GN=TCM_014378 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004018_010 0.0 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
2 Hb_000709_020 0.107592817 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_087426_010 0.1563422412 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
4 Hb_163663_010 0.1577383937 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
5 Hb_056550_010 0.1687628668 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
6 Hb_000351_150 0.1717881243 - - Wall-associated kinase 2, putative [Theobroma cacao]
7 Hb_012807_090 0.2032809035 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
8 Hb_004951_050 0.2050243143 - - conserved hypothetical protein [Ricinus communis]
9 Hb_014929_010 0.2059701288 - - -
10 Hb_000143_070 0.2082499539 - - -
11 Hb_000300_460 0.2103114603 - - Mavicyanin, putative [Ricinus communis]
12 Hb_002850_030 0.210444304 - - -
13 Hb_003279_010 0.211367639 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_121954_010 0.2114581222 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
15 Hb_074822_010 0.2114840416 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
16 Hb_005379_010 0.2120840335 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000646_030 0.2122666644 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_025662_020 0.2122780933 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003797_030 0.2123252506 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002042_240 0.2204512343 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004018_010 Hb_004018_010 Hb_000709_020 Hb_000709_020 Hb_004018_010--Hb_000709_020 Hb_087426_010 Hb_087426_010 Hb_004018_010--Hb_087426_010 Hb_163663_010 Hb_163663_010 Hb_004018_010--Hb_163663_010 Hb_056550_010 Hb_056550_010 Hb_004018_010--Hb_056550_010 Hb_000351_150 Hb_000351_150 Hb_004018_010--Hb_000351_150 Hb_012807_090 Hb_012807_090 Hb_004018_010--Hb_012807_090 Hb_000709_020--Hb_163663_010 Hb_000709_020--Hb_087426_010 Hb_000709_020--Hb_056550_010 Hb_000709_020--Hb_000351_150 Hb_000101_280 Hb_000101_280 Hb_000709_020--Hb_000101_280 Hb_087426_010--Hb_056550_010 Hb_087426_010--Hb_000351_150 Hb_087426_010--Hb_163663_010 Hb_087426_010--Hb_000101_280 Hb_163663_010--Hb_000101_280 Hb_163663_010--Hb_056550_010 Hb_163663_010--Hb_000351_150 Hb_056550_010--Hb_000351_150 Hb_075722_010 Hb_075722_010 Hb_056550_010--Hb_075722_010 Hb_000351_150--Hb_075722_010 Hb_004951_050 Hb_004951_050 Hb_012807_090--Hb_004951_050 Hb_014929_010 Hb_014929_010 Hb_012807_090--Hb_014929_010 Hb_000143_070 Hb_000143_070 Hb_012807_090--Hb_000143_070 Hb_000300_460 Hb_000300_460 Hb_012807_090--Hb_000300_460 Hb_003279_010 Hb_003279_010 Hb_012807_090--Hb_003279_010 Hb_121954_010 Hb_121954_010 Hb_012807_090--Hb_121954_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0335441 0 0 0 0 0.00979178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0842915

CAGE analysis