Hb_000920_090

Information

Type -
Description -
Location Contig920: 55110-56471
Sequence    

Annotation

kegg
ID cic:CICLE_v10011699mg
description hypothetical protein
nr
ID XP_012069207.1
description PREDICTED: LOW QUALITY PROTEIN: vinorine synthase-like [Jatropha curcas]
swissprot
ID Q70PR7
description Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2
trembl
ID V4UU75
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011699mg PE=4 SV=1
Gene Ontology
ID GO:0016747
description anthranilate n-benzoyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_090 0.0 - - PREDICTED: LOW QUALITY PROTEIN: vinorine synthase-like [Jatropha curcas]
2 Hb_012049_030 0.2333333138 - - RNA polymerase beta subunit [Hevea brasiliensis]
3 Hb_001579_210 0.2450130899 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004713_020 0.2660190649 - - -
5 Hb_000200_080 0.2663240585 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
6 Hb_007810_070 0.2980164266 - - hypothetical protein VITISV_027174 [Vitis vinifera]
7 Hb_000237_210 0.3038882215 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007413_030 0.3101788566 - - kinase, putative [Ricinus communis]
9 Hb_158832_010 0.3162924311 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004018_010 0.3167218659 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
11 Hb_000439_020 0.3191996631 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3-like [Jatropha curcas]
12 Hb_012002_010 0.3304472859 - - hypothetical protein VITISV_016116 [Vitis vinifera]
13 Hb_004393_040 0.3306954399 transcription factor TF Family: RAV PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 [Jatropha curcas]
14 Hb_002836_040 0.3332006103 - - Auxin-induced protein 5NG4 [Glycine soja]
15 Hb_007313_060 0.3334894777 - - PREDICTED: paramyosin [Jatropha curcas]
16 Hb_003333_040 0.3342289284 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000709_020 0.3365560098 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_004068_010 0.3408728008 - - beta-amyrin synthase [Euphorbia tirucalli]
19 Hb_056550_010 0.3438094959 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
20 Hb_087426_010 0.3443578349 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]

Gene co-expression network

sample Hb_000920_090 Hb_000920_090 Hb_012049_030 Hb_012049_030 Hb_000920_090--Hb_012049_030 Hb_001579_210 Hb_001579_210 Hb_000920_090--Hb_001579_210 Hb_004713_020 Hb_004713_020 Hb_000920_090--Hb_004713_020 Hb_000200_080 Hb_000200_080 Hb_000920_090--Hb_000200_080 Hb_007810_070 Hb_007810_070 Hb_000920_090--Hb_007810_070 Hb_000237_210 Hb_000237_210 Hb_000920_090--Hb_000237_210 Hb_000275_100 Hb_000275_100 Hb_012049_030--Hb_000275_100 Hb_189208_030 Hb_189208_030 Hb_012049_030--Hb_189208_030 Hb_012049_030--Hb_004713_020 Hb_003333_040 Hb_003333_040 Hb_012049_030--Hb_003333_040 Hb_004393_040 Hb_004393_040 Hb_012049_030--Hb_004393_040 Hb_007413_030 Hb_007413_030 Hb_012049_030--Hb_007413_030 Hb_008408_050 Hb_008408_050 Hb_001579_210--Hb_008408_050 Hb_153636_010 Hb_153636_010 Hb_001579_210--Hb_153636_010 Hb_003228_090 Hb_003228_090 Hb_001579_210--Hb_003228_090 Hb_001579_210--Hb_012049_030 Hb_000351_150 Hb_000351_150 Hb_001579_210--Hb_000351_150 Hb_004068_010 Hb_004068_010 Hb_004713_020--Hb_004068_010 Hb_000439_020 Hb_000439_020 Hb_004713_020--Hb_000439_020 Hb_005779_090 Hb_005779_090 Hb_004713_020--Hb_005779_090 Hb_004713_020--Hb_007413_030 Hb_015234_010 Hb_015234_010 Hb_004713_020--Hb_015234_010 Hb_000200_080--Hb_004713_020 Hb_005379_010 Hb_005379_010 Hb_000200_080--Hb_005379_010 Hb_074822_010 Hb_074822_010 Hb_000200_080--Hb_074822_010 Hb_121954_010 Hb_121954_010 Hb_000200_080--Hb_121954_010 Hb_003279_010 Hb_003279_010 Hb_000200_080--Hb_003279_010 Hb_000646_030 Hb_000646_030 Hb_000200_080--Hb_000646_030 Hb_003032_090 Hb_003032_090 Hb_007810_070--Hb_003032_090 Hb_001338_150 Hb_001338_150 Hb_007810_070--Hb_001338_150 Hb_062192_020 Hb_062192_020 Hb_007810_070--Hb_062192_020 Hb_007810_070--Hb_004713_020 Hb_062192_010 Hb_062192_010 Hb_007810_070--Hb_062192_010 Hb_162094_010 Hb_162094_010 Hb_007810_070--Hb_162094_010 Hb_006637_080 Hb_006637_080 Hb_000237_210--Hb_006637_080 Hb_007313_060 Hb_007313_060 Hb_000237_210--Hb_007313_060 Hb_000172_380 Hb_000172_380 Hb_000237_210--Hb_000172_380 Hb_000599_230 Hb_000599_230 Hb_000237_210--Hb_000599_230 Hb_000505_080 Hb_000505_080 Hb_000237_210--Hb_000505_080 Hb_002681_080 Hb_002681_080 Hb_000237_210--Hb_002681_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.16033 0 0.0228242 0.085586 0.0153502 0.040328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.34343

CAGE analysis