Hb_062192_010

Information

Type -
Description -
Location Contig62192: 7820-8092
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062192_010 0.0 - - -
2 Hb_104735_020 0.1738814085 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
3 Hb_006040_150 0.1775322136 - - -
4 Hb_000826_080 0.179405452 - - -
5 Hb_003633_120 0.189163414 - - PREDICTED: uncharacterized protein LOC104880778 [Vitis vinifera]
6 Hb_062192_020 0.1935727834 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
7 Hb_162094_010 0.1959535742 - - RNA polymerase alpha subunit [Hevea brasiliensis]
8 Hb_034168_010 0.1963680983 - - hypothetical protein [Azospirillum sp. CAG:260]
9 Hb_062273_010 0.2106386551 - - ATP synthase F0 subunit 9 [Chara vulgaris]
10 Hb_003032_090 0.2138743236 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
11 Hb_004880_090 0.2142140192 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_027638_010 0.2157961295 - - Protein KES1, putative [Ricinus communis]
13 Hb_002551_030 0.2169152899 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
14 Hb_032733_030 0.2203029963 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
15 Hb_004374_090 0.2204679132 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
16 Hb_042463_020 0.2207396806 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001338_150 0.2223396974 - - hypothetical chloroplast RF1 [Dillenia indica]
18 Hb_180214_010 0.2260520479 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
19 Hb_000512_050 0.2261023924 - - hypothetical protein VITISV_005640 [Vitis vinifera]
20 Hb_003687_160 0.2262794181 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_062192_010 Hb_062192_010 Hb_104735_020 Hb_104735_020 Hb_062192_010--Hb_104735_020 Hb_006040_150 Hb_006040_150 Hb_062192_010--Hb_006040_150 Hb_000826_080 Hb_000826_080 Hb_062192_010--Hb_000826_080 Hb_003633_120 Hb_003633_120 Hb_062192_010--Hb_003633_120 Hb_062192_020 Hb_062192_020 Hb_062192_010--Hb_062192_020 Hb_162094_010 Hb_162094_010 Hb_062192_010--Hb_162094_010 Hb_042463_020 Hb_042463_020 Hb_104735_020--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_104735_020--Hb_034168_070 Hb_062273_010 Hb_062273_010 Hb_104735_020--Hb_062273_010 Hb_000518_040 Hb_000518_040 Hb_104735_020--Hb_000518_040 Hb_072212_020 Hb_072212_020 Hb_104735_020--Hb_072212_020 Hb_034168_010 Hb_034168_010 Hb_104735_020--Hb_034168_010 Hb_006040_150--Hb_000826_080 Hb_003169_040 Hb_003169_040 Hb_006040_150--Hb_003169_040 Hb_005623_060 Hb_005623_060 Hb_006040_150--Hb_005623_060 Hb_000512_050 Hb_000512_050 Hb_006040_150--Hb_000512_050 Hb_150516_010 Hb_150516_010 Hb_006040_150--Hb_150516_010 Hb_180214_010 Hb_180214_010 Hb_006040_150--Hb_180214_010 Hb_080033_020 Hb_080033_020 Hb_000826_080--Hb_080033_020 Hb_000826_080--Hb_005623_060 Hb_000826_080--Hb_000512_050 Hb_003540_170 Hb_003540_170 Hb_000826_080--Hb_003540_170 Hb_000826_080--Hb_150516_010 Hb_003687_160 Hb_003687_160 Hb_003633_120--Hb_003687_160 Hb_003633_120--Hb_006040_150 Hb_003633_120--Hb_000826_080 Hb_003633_120--Hb_003540_170 Hb_003633_120--Hb_062192_020 Hb_002551_030 Hb_002551_030 Hb_062192_020--Hb_002551_030 Hb_062192_020--Hb_034168_010 Hb_027638_010 Hb_027638_010 Hb_062192_020--Hb_027638_010 Hb_001508_010 Hb_001508_010 Hb_062192_020--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_062192_020--Hb_171685_070 Hb_001490_020 Hb_001490_020 Hb_062192_020--Hb_001490_020 Hb_003963_040 Hb_003963_040 Hb_162094_010--Hb_003963_040 Hb_001338_150 Hb_001338_150 Hb_162094_010--Hb_001338_150 Hb_001338_160 Hb_001338_160 Hb_162094_010--Hb_001338_160 Hb_003032_090 Hb_003032_090 Hb_162094_010--Hb_003032_090 Hb_001155_020 Hb_001155_020 Hb_162094_010--Hb_001155_020 Hb_003693_060 Hb_003693_060 Hb_162094_010--Hb_003693_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.587789 0.854124 0.897531 0 0.212536 0.201365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.355082 7.74179

CAGE analysis