Hb_000826_080

Information

Type -
Description -
Location Contig826: 181942-182953
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000826_080 0.0 - - -
2 Hb_006040_150 0.1126145005 - - -
3 Hb_080033_020 0.1615539149 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
4 Hb_005623_060 0.1617739702 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000512_050 0.163751556 - - hypothetical protein VITISV_005640 [Vitis vinifera]
6 Hb_003540_170 0.168759646 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
7 Hb_150516_010 0.1750512708 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
8 Hb_062192_010 0.179405452 - - -
9 Hb_003302_010 0.1832906631 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
10 Hb_001355_050 0.18911428 - - -
11 Hb_000522_030 0.1931930772 - - hypothetical protein VITISV_006017 [Vitis vinifera]
12 Hb_004374_090 0.1996560516 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
13 Hb_180214_010 0.2001332694 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
14 Hb_089568_010 0.2003765386 - - ferric reductase oxidase [Manihot esculenta]
15 Hb_001587_050 0.2004285754 - - -
16 Hb_003169_040 0.2025902073 - - -
17 Hb_014109_020 0.2068940693 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
18 Hb_003633_120 0.2076643924 - - PREDICTED: uncharacterized protein LOC104880778 [Vitis vinifera]
19 Hb_002798_080 0.2132579252 - - hypothetical protein VITISV_043745 [Vitis vinifera]
20 Hb_001383_080 0.2174388884 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_000826_080 Hb_000826_080 Hb_006040_150 Hb_006040_150 Hb_000826_080--Hb_006040_150 Hb_080033_020 Hb_080033_020 Hb_000826_080--Hb_080033_020 Hb_005623_060 Hb_005623_060 Hb_000826_080--Hb_005623_060 Hb_000512_050 Hb_000512_050 Hb_000826_080--Hb_000512_050 Hb_003540_170 Hb_003540_170 Hb_000826_080--Hb_003540_170 Hb_150516_010 Hb_150516_010 Hb_000826_080--Hb_150516_010 Hb_003169_040 Hb_003169_040 Hb_006040_150--Hb_003169_040 Hb_006040_150--Hb_005623_060 Hb_006040_150--Hb_000512_050 Hb_006040_150--Hb_150516_010 Hb_180214_010 Hb_180214_010 Hb_006040_150--Hb_180214_010 Hb_080033_020--Hb_000512_050 Hb_080033_020--Hb_005623_060 Hb_003302_010 Hb_003302_010 Hb_080033_020--Hb_003302_010 Hb_001587_050 Hb_001587_050 Hb_080033_020--Hb_001587_050 Hb_004407_030 Hb_004407_030 Hb_080033_020--Hb_004407_030 Hb_080033_020--Hb_003169_040 Hb_005623_060--Hb_000512_050 Hb_005623_060--Hb_150516_010 Hb_005623_060--Hb_003169_040 Hb_000522_030 Hb_000522_030 Hb_005623_060--Hb_000522_030 Hb_014109_020 Hb_014109_020 Hb_005623_060--Hb_014109_020 Hb_000512_050--Hb_003169_040 Hb_000512_050--Hb_180214_010 Hb_000512_050--Hb_150516_010 Hb_000512_050--Hb_003302_010 Hb_004374_090 Hb_004374_090 Hb_003540_170--Hb_004374_090 Hb_168319_040 Hb_168319_040 Hb_003540_170--Hb_168319_040 Hb_000360_010 Hb_000360_010 Hb_003540_170--Hb_000360_010 Hb_003540_170--Hb_003302_010 Hb_007201_010 Hb_007201_010 Hb_003540_170--Hb_007201_010 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_000346_050 Hb_000346_050 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0465224 0.0954836 0.146593 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10493 0.816582

CAGE analysis