Hb_006040_150

Information

Type -
Description -
Location Contig6040: 137934-138923
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID F6HSD3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0332g00070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_150 0.0 - - -
2 Hb_000826_080 0.1126145005 - - -
3 Hb_003169_040 0.1364163991 - - -
4 Hb_005623_060 0.1430019375 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000512_050 0.1464651437 - - hypothetical protein VITISV_005640 [Vitis vinifera]
6 Hb_150516_010 0.1605280947 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
7 Hb_180214_010 0.1697552889 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
8 Hb_001383_080 0.1746397502 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
9 Hb_062192_010 0.1775322136 - - -
10 Hb_080033_020 0.1861165051 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
11 Hb_003540_170 0.1870163794 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
12 Hb_144027_010 0.1908334559 - - -
13 Hb_000522_030 0.1923857669 - - hypothetical protein VITISV_006017 [Vitis vinifera]
14 Hb_004899_210 0.1927208109 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
15 Hb_000405_010 0.196615166 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
16 Hb_032717_090 0.1976752449 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011931_090 0.19782488 - - -
18 Hb_003900_040 0.198385307 - - hypothetical protein [Lotus japonicus]
19 Hb_001250_030 0.1988834664 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000346_050 0.1991741947 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_006040_150 Hb_006040_150 Hb_000826_080 Hb_000826_080 Hb_006040_150--Hb_000826_080 Hb_003169_040 Hb_003169_040 Hb_006040_150--Hb_003169_040 Hb_005623_060 Hb_005623_060 Hb_006040_150--Hb_005623_060 Hb_000512_050 Hb_000512_050 Hb_006040_150--Hb_000512_050 Hb_150516_010 Hb_150516_010 Hb_006040_150--Hb_150516_010 Hb_180214_010 Hb_180214_010 Hb_006040_150--Hb_180214_010 Hb_080033_020 Hb_080033_020 Hb_000826_080--Hb_080033_020 Hb_000826_080--Hb_005623_060 Hb_000826_080--Hb_000512_050 Hb_003540_170 Hb_003540_170 Hb_000826_080--Hb_003540_170 Hb_000826_080--Hb_150516_010 Hb_003169_040--Hb_000512_050 Hb_003169_040--Hb_005623_060 Hb_003169_040--Hb_180214_010 Hb_003169_040--Hb_150516_010 Hb_032717_090 Hb_032717_090 Hb_003169_040--Hb_032717_090 Hb_003900_040 Hb_003900_040 Hb_003169_040--Hb_003900_040 Hb_005623_060--Hb_000512_050 Hb_005623_060--Hb_150516_010 Hb_000522_030 Hb_000522_030 Hb_005623_060--Hb_000522_030 Hb_005623_060--Hb_080033_020 Hb_014109_020 Hb_014109_020 Hb_005623_060--Hb_014109_020 Hb_000512_050--Hb_080033_020 Hb_000512_050--Hb_180214_010 Hb_000512_050--Hb_150516_010 Hb_003302_010 Hb_003302_010 Hb_000512_050--Hb_003302_010 Hb_150516_010--Hb_000522_030 Hb_011931_090 Hb_011931_090 Hb_150516_010--Hb_011931_090 Hb_000405_010 Hb_000405_010 Hb_150516_010--Hb_000405_010 Hb_000346_050 Hb_000346_050 Hb_150516_010--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_150516_010--Hb_019654_170 Hb_180214_010--Hb_032717_090 Hb_180214_010--Hb_003900_040 Hb_180214_010--Hb_005623_060 Hb_001383_080 Hb_001383_080 Hb_180214_010--Hb_001383_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.038975 0.131729 0.0628255 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.08689 0.833129

CAGE analysis