Hb_003633_120

Information

Type -
Description -
Location Contig3633: 98972-101768
Sequence    

Annotation

kegg
ID vvi:104880778
description uncharacterized LOC104880778
nr
ID XP_010656794.1
description PREDICTED: uncharacterized protein LOC104880778 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5B501
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022975 PE=4 SV=1
Gene Ontology
ID GO:0000166
description gag-pol partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_120 0.0 - - PREDICTED: uncharacterized protein LOC104880778 [Vitis vinifera]
2 Hb_062192_010 0.189163414 - - -
3 Hb_003687_160 0.1983954163 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_006040_150 0.2031185306 - - -
5 Hb_000826_080 0.2076643924 - - -
6 Hb_003540_170 0.2116970012 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Jatropha curcas]
7 Hb_062192_020 0.2199235518 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
8 Hb_011218_030 0.2204114261 - - hypothetical protein VITISV_002891 [Vitis vinifera]
9 Hb_034168_010 0.2239160723 - - hypothetical protein [Azospirillum sp. CAG:260]
10 Hb_007201_010 0.2268062769 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
11 Hb_004374_090 0.2317406066 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
12 Hb_104735_020 0.2355061469 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
13 Hb_000123_340 0.2457311295 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
14 Hb_006925_030 0.2489258676 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
15 Hb_127552_050 0.2492571516 - - hypothetical protein VITISV_030752 [Vitis vinifera]
16 Hb_002551_030 0.2512444889 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
17 Hb_000574_040 0.2524573287 - - PREDICTED: triphosphate tunel metalloenzyme 3-like isoform X1 [Jatropha curcas]
18 Hb_101733_010 0.2527777876 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008305_010 0.2537986087 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000011_470 0.2541571239 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]

Gene co-expression network

sample Hb_003633_120 Hb_003633_120 Hb_062192_010 Hb_062192_010 Hb_003633_120--Hb_062192_010 Hb_003687_160 Hb_003687_160 Hb_003633_120--Hb_003687_160 Hb_006040_150 Hb_006040_150 Hb_003633_120--Hb_006040_150 Hb_000826_080 Hb_000826_080 Hb_003633_120--Hb_000826_080 Hb_003540_170 Hb_003540_170 Hb_003633_120--Hb_003540_170 Hb_062192_020 Hb_062192_020 Hb_003633_120--Hb_062192_020 Hb_104735_020 Hb_104735_020 Hb_062192_010--Hb_104735_020 Hb_062192_010--Hb_006040_150 Hb_062192_010--Hb_000826_080 Hb_062192_010--Hb_062192_020 Hb_162094_010 Hb_162094_010 Hb_062192_010--Hb_162094_010 Hb_000123_340 Hb_000123_340 Hb_003687_160--Hb_000123_340 Hb_004242_120 Hb_004242_120 Hb_003687_160--Hb_004242_120 Hb_000360_010 Hb_000360_010 Hb_003687_160--Hb_000360_010 Hb_004109_130 Hb_004109_130 Hb_003687_160--Hb_004109_130 Hb_011649_030 Hb_011649_030 Hb_003687_160--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_003687_160--Hb_127552_050 Hb_006040_150--Hb_000826_080 Hb_003169_040 Hb_003169_040 Hb_006040_150--Hb_003169_040 Hb_005623_060 Hb_005623_060 Hb_006040_150--Hb_005623_060 Hb_000512_050 Hb_000512_050 Hb_006040_150--Hb_000512_050 Hb_150516_010 Hb_150516_010 Hb_006040_150--Hb_150516_010 Hb_180214_010 Hb_180214_010 Hb_006040_150--Hb_180214_010 Hb_080033_020 Hb_080033_020 Hb_000826_080--Hb_080033_020 Hb_000826_080--Hb_005623_060 Hb_000826_080--Hb_000512_050 Hb_000826_080--Hb_003540_170 Hb_000826_080--Hb_150516_010 Hb_004374_090 Hb_004374_090 Hb_003540_170--Hb_004374_090 Hb_168319_040 Hb_168319_040 Hb_003540_170--Hb_168319_040 Hb_003540_170--Hb_000360_010 Hb_003302_010 Hb_003302_010 Hb_003540_170--Hb_003302_010 Hb_007201_010 Hb_007201_010 Hb_003540_170--Hb_007201_010 Hb_002551_030 Hb_002551_030 Hb_062192_020--Hb_002551_030 Hb_034168_010 Hb_034168_010 Hb_062192_020--Hb_034168_010 Hb_027638_010 Hb_027638_010 Hb_062192_020--Hb_027638_010 Hb_001508_010 Hb_001508_010 Hb_062192_020--Hb_001508_010 Hb_171685_070 Hb_171685_070 Hb_062192_020--Hb_171685_070 Hb_001490_020 Hb_001490_020 Hb_062192_020--Hb_001490_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.115854 0.138877 0.116781 0.00722493 0 0.0186211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0460303 0.0181089 0 0.0648516 1.03276

CAGE analysis