Hb_000049_220

Information

Type -
Description -
Location Contig49: 184923-186149
Sequence    

Annotation

kegg
ID rcu:RCOM_1243420
description ammonium transporter, putative
nr
ID XP_002516694.1
description ammonium transporter, putative [Ricinus communis]
swissprot
ID P58905
description Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1
trembl
ID B9RSH5
description Ammonium transporter OS=Ricinus communis GN=RCOM_1243420 PE=3 SV=1
Gene Ontology
ID GO:0009506
description ammonium transporter 1 member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_220 0.0 - - ammonium transporter, putative [Ricinus communis]
2 Hb_004143_030 0.1839658794 - - PREDICTED: chromosome-associated kinesin KIF4B [Jatropha curcas]
3 Hb_007504_030 0.2420297603 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
4 Hb_134546_010 0.2437203934 - - PREDICTED: uncharacterized protein LOC105107372 [Populus euphratica]
5 Hb_001257_150 0.253098703 - - -
6 Hb_027380_240 0.2562420692 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic [Jatropha curcas]
7 Hb_000189_400 0.2565911181 - - hypothetical protein CathTA2_0066 [Caldalkalibacillus thermarum TA2.A1]
8 Hb_000608_330 0.2653101508 - - Zeamatin precursor, putative [Ricinus communis]
9 Hb_004724_050 0.2710608195 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
10 Hb_007317_170 0.2718108975 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
11 Hb_000367_230 0.2907149462 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_004048_030 0.2920685288 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
13 Hb_185274_030 0.2929761436 - - hypothetical protein JCGZ_15170 [Jatropha curcas]
14 Hb_003228_090 0.2939621265 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
15 Hb_007504_040 0.3002820422 - - hypothetical chloroplast RF2 [Fragaria iinumae]
16 Hb_003055_030 0.3064184277 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
17 Hb_000032_120 0.3096562046 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
18 Hb_001068_060 0.3096564946 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
19 Hb_099335_020 0.3096590983 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
20 Hb_000877_010 0.3096705031 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]

Gene co-expression network

sample Hb_000049_220 Hb_000049_220 Hb_004143_030 Hb_004143_030 Hb_000049_220--Hb_004143_030 Hb_007504_030 Hb_007504_030 Hb_000049_220--Hb_007504_030 Hb_134546_010 Hb_134546_010 Hb_000049_220--Hb_134546_010 Hb_001257_150 Hb_001257_150 Hb_000049_220--Hb_001257_150 Hb_027380_240 Hb_027380_240 Hb_000049_220--Hb_027380_240 Hb_000189_400 Hb_000189_400 Hb_000049_220--Hb_000189_400 Hb_004143_030--Hb_027380_240 Hb_004143_030--Hb_007504_030 Hb_007317_170 Hb_007317_170 Hb_004143_030--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_004143_030--Hb_000603_270 Hb_004738_060 Hb_004738_060 Hb_004143_030--Hb_004738_060 Hb_007504_030--Hb_007317_170 Hb_007504_030--Hb_000603_270 Hb_003055_030 Hb_003055_030 Hb_007504_030--Hb_003055_030 Hb_071126_010 Hb_071126_010 Hb_007504_030--Hb_071126_010 Hb_004208_090 Hb_004208_090 Hb_007504_030--Hb_004208_090 Hb_000608_330 Hb_000608_330 Hb_134546_010--Hb_000608_330 Hb_007242_030 Hb_007242_030 Hb_134546_010--Hb_007242_030 Hb_046615_030 Hb_046615_030 Hb_134546_010--Hb_046615_030 Hb_134546_010--Hb_000189_400 Hb_000165_170 Hb_000165_170 Hb_134546_010--Hb_000165_170 Hb_001089_010 Hb_001089_010 Hb_134546_010--Hb_001089_010 Hb_014870_010 Hb_014870_010 Hb_001257_150--Hb_014870_010 Hb_001935_050 Hb_001935_050 Hb_001257_150--Hb_001935_050 Hb_000084_270 Hb_000084_270 Hb_001257_150--Hb_000084_270 Hb_000864_040 Hb_000864_040 Hb_001257_150--Hb_000864_040 Hb_000186_020 Hb_000186_020 Hb_001257_150--Hb_000186_020 Hb_000189_610 Hb_000189_610 Hb_001257_150--Hb_000189_610 Hb_162094_010 Hb_162094_010 Hb_027380_240--Hb_162094_010 Hb_001338_160 Hb_001338_160 Hb_027380_240--Hb_001338_160 Hb_001155_020 Hb_001155_020 Hb_027380_240--Hb_001155_020 Hb_008206_070 Hb_008206_070 Hb_027380_240--Hb_008206_070 Hb_000189_400--Hb_046615_030 Hb_001338_130 Hb_001338_130 Hb_000189_400--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_000189_400--Hb_107373_010 Hb_020805_050 Hb_020805_050 Hb_000189_400--Hb_020805_050 Hb_003921_010 Hb_003921_010 Hb_000189_400--Hb_003921_010 Hb_180985_010 Hb_180985_010 Hb_000189_400--Hb_180985_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0519071 0 0.197282 0 0 0.0332557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.193184

CAGE analysis