Hb_000603_270

Information

Type -
Description -
Location Contig603: 286184-287645
Sequence    

Annotation

kegg
ID rcu:RCOM_0707460
description hypothetical protein
nr
ID XP_012077192.1
description PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
swissprot
ID Q9TM45
description Uncharacterized protein ycf19 OS=Cyanidium caldarium GN=ycf19 PE=3 SV=1
trembl
ID A0A067KCS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07597 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50664: 286119-287561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_270 0.0 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
2 Hb_007504_030 0.1464742001 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
3 Hb_002400_010 0.1539070681 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
4 Hb_002498_170 0.15727819 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
5 Hb_000340_410 0.1809718002 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
6 Hb_001352_080 0.1831545315 - - PREDICTED: uncharacterized protein At5g02240 [Jatropha curcas]
7 Hb_000322_040 0.1877593339 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
8 Hb_004542_020 0.1925016008 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
9 Hb_015531_030 0.1928440536 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007317_170 0.1933489371 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
11 Hb_000260_590 0.193550256 - - electron transporter, putative [Ricinus communis]
12 Hb_001975_050 0.1946523103 - - Tyrosine-specific transport protein, putative [Ricinus communis]
13 Hb_001959_240 0.1980737768 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_004208_090 0.2000195547 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
15 Hb_006618_070 0.2004593598 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
16 Hb_006846_160 0.2004773148 - - electron transporter, putative [Ricinus communis]
17 Hb_006252_030 0.2006368067 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
18 Hb_000934_260 0.2039508662 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_002249_040 0.2085016256 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
20 Hb_103990_010 0.2085885901 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000603_270 Hb_000603_270 Hb_007504_030 Hb_007504_030 Hb_000603_270--Hb_007504_030 Hb_002400_010 Hb_002400_010 Hb_000603_270--Hb_002400_010 Hb_002498_170 Hb_002498_170 Hb_000603_270--Hb_002498_170 Hb_000340_410 Hb_000340_410 Hb_000603_270--Hb_000340_410 Hb_001352_080 Hb_001352_080 Hb_000603_270--Hb_001352_080 Hb_000322_040 Hb_000322_040 Hb_000603_270--Hb_000322_040 Hb_007317_170 Hb_007317_170 Hb_007504_030--Hb_007317_170 Hb_003055_030 Hb_003055_030 Hb_007504_030--Hb_003055_030 Hb_004143_030 Hb_004143_030 Hb_007504_030--Hb_004143_030 Hb_071126_010 Hb_071126_010 Hb_007504_030--Hb_071126_010 Hb_004208_090 Hb_004208_090 Hb_007504_030--Hb_004208_090 Hb_002400_010--Hb_004208_090 Hb_000056_310 Hb_000056_310 Hb_002400_010--Hb_000056_310 Hb_000934_260 Hb_000934_260 Hb_002400_010--Hb_000934_260 Hb_000749_200 Hb_000749_200 Hb_002400_010--Hb_000749_200 Hb_006252_030 Hb_006252_030 Hb_002400_010--Hb_006252_030 Hb_002400_010--Hb_000322_040 Hb_002498_170--Hb_000340_410 Hb_006846_160 Hb_006846_160 Hb_002498_170--Hb_006846_160 Hb_002498_170--Hb_006252_030 Hb_004052_070 Hb_004052_070 Hb_002498_170--Hb_004052_070 Hb_006618_070 Hb_006618_070 Hb_002498_170--Hb_006618_070 Hb_002498_170--Hb_000322_040 Hb_188063_030 Hb_188063_030 Hb_000340_410--Hb_188063_030 Hb_014320_010 Hb_014320_010 Hb_000340_410--Hb_014320_010 Hb_000340_410--Hb_006252_030 Hb_000340_410--Hb_006846_160 Hb_000340_410--Hb_000322_040 Hb_005038_030 Hb_005038_030 Hb_001352_080--Hb_005038_030 Hb_001907_070 Hb_001907_070 Hb_001352_080--Hb_001907_070 Hb_001352_080--Hb_002498_170 Hb_001959_240 Hb_001959_240 Hb_001352_080--Hb_001959_240 Hb_006911_070 Hb_006911_070 Hb_001352_080--Hb_006911_070 Hb_001352_080--Hb_006846_160 Hb_000322_040--Hb_006252_030 Hb_000322_040--Hb_000934_260 Hb_000322_040--Hb_000056_310 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5746 4.07213 71.6184 12.5831 12.3906 24.6039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32372 0.846859 2.03823 0.628799 48.1802

CAGE analysis