Hb_004738_060

Information

Type -
Description -
Location Contig4738: 81250-81498
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_912661
description hypothetical protein
nr
ID XP_002866978.1
description predicted protein [Arabidopsis lyrata subsp. lyrata]
swissprot
ID -
description -
trembl
ID D7MB21
description Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_912661 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004738_060 0.0 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
2 Hb_004143_030 0.2894447223 - - PREDICTED: chromosome-associated kinesin KIF4B [Jatropha curcas]
3 Hb_008408_050 0.3165378153 - - -
4 Hb_000059_120 0.3346349386 - - JHL22C18.10 [Jatropha curcas]
5 Hb_001579_210 0.342906886 - - conserved hypothetical protein [Ricinus communis]
6 Hb_021409_130 0.3500254677 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
7 Hb_000842_060 0.3560415137 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
8 Hb_027380_240 0.3593457119 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic [Jatropha curcas]
9 Hb_005534_030 0.3616361892 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
10 Hb_004176_060 0.3626593407 - - -
11 Hb_009913_020 0.3629267375 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003228_090 0.3675912102 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105637258 [Jatropha curcas]
13 Hb_000115_070 0.3685766767 - - hypothetical protein RCOM_0030010 [Ricinus communis]
14 Hb_002843_090 0.3706087816 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
15 Hb_000049_220 0.3730685724 - - ammonium transporter, putative [Ricinus communis]
16 Hb_013124_010 0.3755911172 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
17 Hb_059436_010 0.3771827539 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
18 Hb_000028_640 0.3779025286 - - Auxin efflux carrier component, putative [Ricinus communis]
19 Hb_153636_010 0.3838794451 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
20 Hb_008206_070 0.3874088071 - - hypothetical protein JCGZ_01495 [Jatropha curcas]

Gene co-expression network

sample Hb_004738_060 Hb_004738_060 Hb_004143_030 Hb_004143_030 Hb_004738_060--Hb_004143_030 Hb_008408_050 Hb_008408_050 Hb_004738_060--Hb_008408_050 Hb_000059_120 Hb_000059_120 Hb_004738_060--Hb_000059_120 Hb_001579_210 Hb_001579_210 Hb_004738_060--Hb_001579_210 Hb_021409_130 Hb_021409_130 Hb_004738_060--Hb_021409_130 Hb_000842_060 Hb_000842_060 Hb_004738_060--Hb_000842_060 Hb_000049_220 Hb_000049_220 Hb_004143_030--Hb_000049_220 Hb_027380_240 Hb_027380_240 Hb_004143_030--Hb_027380_240 Hb_007504_030 Hb_007504_030 Hb_004143_030--Hb_007504_030 Hb_007317_170 Hb_007317_170 Hb_004143_030--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_004143_030--Hb_000603_270 Hb_153636_010 Hb_153636_010 Hb_008408_050--Hb_153636_010 Hb_008408_050--Hb_001579_210 Hb_003228_090 Hb_003228_090 Hb_008408_050--Hb_003228_090 Hb_075722_010 Hb_075722_010 Hb_008408_050--Hb_075722_010 Hb_003417_070 Hb_003417_070 Hb_008408_050--Hb_003417_070 Hb_012090_020 Hb_012090_020 Hb_008408_050--Hb_012090_020 Hb_008206_070 Hb_008206_070 Hb_000059_120--Hb_008206_070 Hb_000059_120--Hb_153636_010 Hb_007040_010 Hb_007040_010 Hb_000059_120--Hb_007040_010 Hb_000059_120--Hb_003228_090 Hb_008643_050 Hb_008643_050 Hb_000059_120--Hb_008643_050 Hb_001390_080 Hb_001390_080 Hb_000059_120--Hb_001390_080 Hb_000920_090 Hb_000920_090 Hb_001579_210--Hb_000920_090 Hb_001579_210--Hb_153636_010 Hb_001579_210--Hb_003228_090 Hb_012049_030 Hb_012049_030 Hb_001579_210--Hb_012049_030 Hb_000351_150 Hb_000351_150 Hb_001579_210--Hb_000351_150 Hb_001248_040 Hb_001248_040 Hb_021409_130--Hb_001248_040 Hb_000274_030 Hb_000274_030 Hb_021409_130--Hb_000274_030 Hb_003266_120 Hb_003266_120 Hb_021409_130--Hb_003266_120 Hb_043295_010 Hb_043295_010 Hb_021409_130--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_021409_130--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_021409_130--Hb_000964_160 Hb_002986_080 Hb_002986_080 Hb_000842_060--Hb_002986_080 Hb_000138_050 Hb_000138_050 Hb_000842_060--Hb_000138_050 Hb_002475_120 Hb_002475_120 Hb_000842_060--Hb_002475_120 Hb_028207_020 Hb_028207_020 Hb_000842_060--Hb_028207_020 Hb_001195_120 Hb_001195_120 Hb_000842_060--Hb_001195_120 Hb_002596_030 Hb_002596_030 Hb_000842_060--Hb_002596_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28328 0 0.832198 0 0.27235 0.289627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.68341

CAGE analysis