Hb_000842_060

Information

Type -
Description -
Location Contig842: 120683-123997
Sequence    

Annotation

kegg
ID rcu:RCOM_0274300
description hypothetical protein
nr
ID XP_012075494.1
description PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10997 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60158: 120662-123958 , PASA_asmbl_60161: 121190-121452 , PASA_asmbl_60162: 121825-121951
cDNA
(Sanger)
(ID:Location)		 043_C17.ab1: 121199-123199

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000842_060 0.0 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]
2 Hb_002986_080 0.2122757598 - - PREDICTED: cyclin-dependent kinase inhibitor 7 [Jatropha curcas]
3 Hb_000138_050 0.2214954353 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
4 Hb_002475_120 0.2350681385 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
5 Hb_028207_020 0.2390001308 - - PREDICTED: uncharacterized protein LOC105650315 isoform X2 [Jatropha curcas]
6 Hb_001195_120 0.2396963226 - - oxidoreductase, putative [Ricinus communis]
7 Hb_002596_030 0.2402643043 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
8 Hb_002701_120 0.2404494763 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
9 Hb_000694_030 0.243523233 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
10 Hb_006816_330 0.2525930156 - - exonuclease, putative [Ricinus communis]
11 Hb_004176_060 0.258714708 - - -
12 Hb_002783_020 0.2615303788 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
13 Hb_002255_040 0.2616069693 - - PREDICTED: biotin synthase [Jatropha curcas]
14 Hb_003581_210 0.2637229772 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
15 Hb_001021_160 0.2649291876 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
16 Hb_002843_090 0.265877686 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
17 Hb_000424_020 0.2664361487 - - Uncharacterized protein TCM_037386 [Theobroma cacao]
18 Hb_010367_030 0.2700596695 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006326_050 0.2712483139 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
20 Hb_027402_090 0.2717855179 - - endonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000842_060 Hb_000842_060 Hb_002986_080 Hb_002986_080 Hb_000842_060--Hb_002986_080 Hb_000138_050 Hb_000138_050 Hb_000842_060--Hb_000138_050 Hb_002475_120 Hb_002475_120 Hb_000842_060--Hb_002475_120 Hb_028207_020 Hb_028207_020 Hb_000842_060--Hb_028207_020 Hb_001195_120 Hb_001195_120 Hb_000842_060--Hb_001195_120 Hb_002596_030 Hb_002596_030 Hb_000842_060--Hb_002596_030 Hb_010367_030 Hb_010367_030 Hb_002986_080--Hb_010367_030 Hb_002986_080--Hb_028207_020 Hb_003581_210 Hb_003581_210 Hb_002986_080--Hb_003581_210 Hb_003861_070 Hb_003861_070 Hb_002986_080--Hb_003861_070 Hb_002255_040 Hb_002255_040 Hb_002986_080--Hb_002255_040 Hb_000424_020 Hb_000424_020 Hb_002986_080--Hb_000424_020 Hb_000261_330 Hb_000261_330 Hb_000138_050--Hb_000261_330 Hb_001357_330 Hb_001357_330 Hb_000138_050--Hb_001357_330 Hb_000270_870 Hb_000270_870 Hb_000138_050--Hb_000270_870 Hb_024836_010 Hb_024836_010 Hb_000138_050--Hb_024836_010 Hb_074449_010 Hb_074449_010 Hb_000138_050--Hb_074449_010 Hb_000138_050--Hb_002986_080 Hb_006816_330 Hb_006816_330 Hb_002475_120--Hb_006816_330 Hb_008511_060 Hb_008511_060 Hb_002475_120--Hb_008511_060 Hb_004052_070 Hb_004052_070 Hb_002475_120--Hb_004052_070 Hb_001021_160 Hb_001021_160 Hb_002475_120--Hb_001021_160 Hb_012586_050 Hb_012586_050 Hb_002475_120--Hb_012586_050 Hb_149838_010 Hb_149838_010 Hb_002475_120--Hb_149838_010 Hb_006326_050 Hb_006326_050 Hb_028207_020--Hb_006326_050 Hb_028207_020--Hb_002255_040 Hb_028207_020--Hb_010367_030 Hb_065755_030 Hb_065755_030 Hb_028207_020--Hb_065755_030 Hb_028207_020--Hb_003581_210 Hb_011249_030 Hb_011249_030 Hb_028207_020--Hb_011249_030 Hb_001195_120--Hb_028207_020 Hb_163591_010 Hb_163591_010 Hb_001195_120--Hb_163591_010 Hb_001195_120--Hb_001021_160 Hb_001807_010 Hb_001807_010 Hb_001195_120--Hb_001807_010 Hb_004800_150 Hb_004800_150 Hb_001195_120--Hb_004800_150 Hb_188996_010 Hb_188996_010 Hb_001195_120--Hb_188996_010 Hb_002701_120 Hb_002701_120 Hb_002596_030--Hb_002701_120 Hb_000390_310 Hb_000390_310 Hb_002596_030--Hb_000390_310 Hb_005276_130 Hb_005276_130 Hb_002596_030--Hb_005276_130 Hb_005527_010 Hb_005527_010 Hb_002596_030--Hb_005527_010 Hb_000175_590 Hb_000175_590 Hb_002596_030--Hb_000175_590 Hb_000694_030 Hb_000694_030 Hb_002596_030--Hb_000694_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
231.922 12.8747 323.272 47.8521 81.1662 52.1248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.2731 8.08534 14.1973 9.01235 46.474

CAGE analysis