Hb_001357_330

Information

Type -
Description -
Location Contig1357: 245775-246614
Sequence    

Annotation

kegg
ID rcu:RCOM_1287170
description hypothetical protein
nr
ID XP_012065154.1
description PREDICTED: paraspeckle component 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L601
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09944: 245697-247980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_330 0.0 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
2 Hb_000270_870 0.1898857076 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
3 Hb_074449_010 0.1934936402 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
4 Hb_024836_010 0.2011873297 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
5 Hb_000138_050 0.2030713158 transcription factor TF Family: HB Homeobox-leucine zipper protein HAT14, putative [Ricinus communis]
6 Hb_010942_020 0.2050868493 - - conserved hypothetical protein [Ricinus communis]
7 Hb_161478_010 0.2090730301 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_000479_290 0.2115406804 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X2 [Jatropha curcas]
9 Hb_001488_340 0.213232893 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
10 Hb_004032_160 0.2184154225 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
11 Hb_001085_260 0.2186227491 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
12 Hb_035436_010 0.2192712365 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
13 Hb_002485_030 0.2216114135 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
14 Hb_010053_040 0.2257841224 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
15 Hb_000261_330 0.2262705387 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
16 Hb_133724_010 0.2269656024 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004052_160 0.2278829978 - - Chain A, Rna Binding Protein
18 Hb_002217_380 0.2290286266 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
19 Hb_007765_070 0.2290626674 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
20 Hb_000074_100 0.2314844854 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001357_330 Hb_001357_330 Hb_000270_870 Hb_000270_870 Hb_001357_330--Hb_000270_870 Hb_074449_010 Hb_074449_010 Hb_001357_330--Hb_074449_010 Hb_024836_010 Hb_024836_010 Hb_001357_330--Hb_024836_010 Hb_000138_050 Hb_000138_050 Hb_001357_330--Hb_000138_050 Hb_010942_020 Hb_010942_020 Hb_001357_330--Hb_010942_020 Hb_161478_010 Hb_161478_010 Hb_001357_330--Hb_161478_010 Hb_002804_020 Hb_002804_020 Hb_000270_870--Hb_002804_020 Hb_003872_010 Hb_003872_010 Hb_000270_870--Hb_003872_010 Hb_001776_030 Hb_001776_030 Hb_000270_870--Hb_001776_030 Hb_001488_340 Hb_001488_340 Hb_000270_870--Hb_001488_340 Hb_008511_060 Hb_008511_060 Hb_000270_870--Hb_008511_060 Hb_010053_040 Hb_010053_040 Hb_000270_870--Hb_010053_040 Hb_074449_010--Hb_001488_340 Hb_074449_010--Hb_002804_020 Hb_074449_010--Hb_161478_010 Hb_010883_140 Hb_010883_140 Hb_074449_010--Hb_010883_140 Hb_002541_020 Hb_002541_020 Hb_074449_010--Hb_002541_020 Hb_074449_010--Hb_000270_870 Hb_002485_030 Hb_002485_030 Hb_024836_010--Hb_002485_030 Hb_003688_040 Hb_003688_040 Hb_024836_010--Hb_003688_040 Hb_000300_690 Hb_000300_690 Hb_024836_010--Hb_000300_690 Hb_006405_050 Hb_006405_050 Hb_024836_010--Hb_006405_050 Hb_001817_150 Hb_001817_150 Hb_024836_010--Hb_001817_150 Hb_001085_260 Hb_001085_260 Hb_024836_010--Hb_001085_260 Hb_000261_330 Hb_000261_330 Hb_000138_050--Hb_000261_330 Hb_000138_050--Hb_000270_870 Hb_000138_050--Hb_024836_010 Hb_000138_050--Hb_074449_010 Hb_002986_080 Hb_002986_080 Hb_000138_050--Hb_002986_080 Hb_002818_050 Hb_002818_050 Hb_010942_020--Hb_002818_050 Hb_010942_020--Hb_002804_020 Hb_010942_020--Hb_074449_010 Hb_004032_160 Hb_004032_160 Hb_010942_020--Hb_004032_160 Hb_010942_020--Hb_002541_020 Hb_001519_040 Hb_001519_040 Hb_010942_020--Hb_001519_040 Hb_162040_010 Hb_162040_010 Hb_161478_010--Hb_162040_010 Hb_161478_010--Hb_001085_260 Hb_161478_010--Hb_002485_030 Hb_007951_040 Hb_007951_040 Hb_161478_010--Hb_007951_040 Hb_007477_030 Hb_007477_030 Hb_161478_010--Hb_007477_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.59072 1.64214 6.25142 6.41565 0.268186 4.81327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35385 2.06606 1.11857 0.712908 0.991976

CAGE analysis