Hb_006816_330

Information

Type -
Description -
Location Contig6816: 208816-211052
Sequence    

Annotation

kegg
ID rcu:RCOM_1434480
description exonuclease, putative (EC:2.7.7.7)
nr
ID XP_002512483.1
description exonuclease, putative [Ricinus communis]
swissprot
ID Q682U6
description Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=DPD1 PE=1 SV=1
trembl
ID B9RFG4
description Exonuclease, putative OS=Ricinus communis GN=RCOM_1434480 PE=4 SV=1
Gene Ontology
ID GO:0005739
description exonuclease chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53826: 207572-208280 , PASA_asmbl_53827: 207572-209019 , PASA_asmbl_53828: 209167-210986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_330 0.0 - - exonuclease, putative [Ricinus communis]
2 Hb_001486_170 0.1327133009 - - PREDICTED: syntaxin-132 [Jatropha curcas]
3 Hb_008511_060 0.137924494 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
4 Hb_013726_080 0.1521610281 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
5 Hb_002805_060 0.1563435 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
6 Hb_003430_090 0.1563692154 - - ATP binding protein, putative [Ricinus communis]
7 Hb_012586_050 0.1586065572 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
8 Hb_001266_140 0.1609425134 - - PREDICTED: protein RER1B [Jatropha curcas]
9 Hb_000189_510 0.1649103062 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
10 Hb_000453_040 0.1649791989 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
11 Hb_000175_590 0.1659403585 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
12 Hb_006326_050 0.1659451599 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
13 Hb_012098_150 0.1674784575 - - ARC5 protein [Manihot esculenta]
14 Hb_002681_170 0.1681486082 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
15 Hb_002475_120 0.1682253699 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
16 Hb_029142_030 0.1685778186 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
17 Hb_002232_190 0.1693477488 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002750_050 0.1704150621 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
19 Hb_005463_130 0.1707623356 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
20 Hb_149838_010 0.1711265166 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_330 Hb_006816_330 Hb_001486_170 Hb_001486_170 Hb_006816_330--Hb_001486_170 Hb_008511_060 Hb_008511_060 Hb_006816_330--Hb_008511_060 Hb_013726_080 Hb_013726_080 Hb_006816_330--Hb_013726_080 Hb_002805_060 Hb_002805_060 Hb_006816_330--Hb_002805_060 Hb_003430_090 Hb_003430_090 Hb_006816_330--Hb_003430_090 Hb_012586_050 Hb_012586_050 Hb_006816_330--Hb_012586_050 Hb_005463_130 Hb_005463_130 Hb_001486_170--Hb_005463_130 Hb_002836_140 Hb_002836_140 Hb_001486_170--Hb_002836_140 Hb_001486_170--Hb_013726_080 Hb_002054_050 Hb_002054_050 Hb_001486_170--Hb_002054_050 Hb_000915_080 Hb_000915_080 Hb_001486_170--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_001486_170--Hb_008556_030 Hb_006831_070 Hb_006831_070 Hb_008511_060--Hb_006831_070 Hb_002217_380 Hb_002217_380 Hb_008511_060--Hb_002217_380 Hb_009393_200 Hb_009393_200 Hb_008511_060--Hb_009393_200 Hb_086022_010 Hb_086022_010 Hb_008511_060--Hb_086022_010 Hb_010053_040 Hb_010053_040 Hb_008511_060--Hb_010053_040 Hb_000608_350 Hb_000608_350 Hb_008511_060--Hb_000608_350 Hb_002539_110 Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_013726_080--Hb_000915_080 Hb_013726_080--Hb_005463_130 Hb_013726_080--Hb_002054_050 Hb_013726_080--Hb_003430_090 Hb_027380_030 Hb_027380_030 Hb_002805_060--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_002805_060--Hb_002092_100 Hb_000599_170 Hb_000599_170 Hb_002805_060--Hb_000599_170 Hb_003894_040 Hb_003894_040 Hb_002805_060--Hb_003894_040 Hb_002681_170 Hb_002681_170 Hb_002805_060--Hb_002681_170 Hb_002896_060 Hb_002896_060 Hb_002805_060--Hb_002896_060 Hb_002750_050 Hb_002750_050 Hb_003430_090--Hb_002750_050 Hb_000392_370 Hb_000392_370 Hb_003430_090--Hb_000392_370 Hb_000207_190 Hb_000207_190 Hb_003430_090--Hb_000207_190 Hb_041290_010 Hb_041290_010 Hb_003430_090--Hb_041290_010 Hb_003430_090--Hb_000915_080 Hb_002232_190 Hb_002232_190 Hb_012586_050--Hb_002232_190 Hb_000139_220 Hb_000139_220 Hb_012586_050--Hb_000139_220 Hb_000453_040 Hb_000453_040 Hb_012586_050--Hb_000453_040 Hb_004223_110 Hb_004223_110 Hb_012586_050--Hb_004223_110 Hb_019715_010 Hb_019715_010 Hb_012586_050--Hb_019715_010 Hb_012586_050--Hb_000599_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2971 1.99248 19.459 8.92709 12.9851 12.2983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.9168 2.60724 2.51443 2.47835 6.50576

CAGE analysis