Hb_007100_020

Information

Type -
Description -
Location Contig7100: 12412-13072
Sequence    

Annotation

kegg
ID pop:POPTR_0473s00220g
description hypothetical protein
nr
ID XP_006387932.1
description hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
swissprot
ID P07053
description Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1
trembl
ID U7E120
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0473s00220g PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007100_020 0.0 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
2 Hb_004918_010 0.1629319446 - - protein binding protein, putative [Ricinus communis]
3 Hb_024758_030 0.229010636 - - hypothetical protein JCGZ_16050 [Jatropha curcas]
4 Hb_007885_020 0.2594930174 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
5 Hb_005357_180 0.2705859527 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
6 Hb_000300_100 0.2770587247 - - NADH-cytochrome b5 reductase 1 [Morus notabilis]
7 Hb_006152_040 0.2779872269 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]
8 Hb_012813_020 0.2826103459 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like isoform X2 [Jatropha curcas]
9 Hb_007007_130 0.2935271867 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
10 Hb_011930_170 0.301995079 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_004650_030 0.3036846849 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
12 Hb_023771_030 0.3067558198 - - unnamed protein product [Vitis vinifera]
13 Hb_006916_130 0.3101386259 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
14 Hb_007213_020 0.3103451769 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
15 Hb_001205_060 0.3142406479 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
16 Hb_000307_040 0.3155967968 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
17 Hb_000883_160 0.3168087623 - - PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
18 Hb_005694_050 0.3180087962 - - NC domain-containing family protein [Populus trichocarpa]
19 Hb_002387_140 0.3240975238 - - PREDICTED: serine/threonine-protein kinase At5g01020-like [Jatropha curcas]
20 Hb_006978_020 0.3254560028 - - PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007100_020 Hb_007100_020 Hb_004918_010 Hb_004918_010 Hb_007100_020--Hb_004918_010 Hb_024758_030 Hb_024758_030 Hb_007100_020--Hb_024758_030 Hb_007885_020 Hb_007885_020 Hb_007100_020--Hb_007885_020 Hb_005357_180 Hb_005357_180 Hb_007100_020--Hb_005357_180 Hb_000300_100 Hb_000300_100 Hb_007100_020--Hb_000300_100 Hb_006152_040 Hb_006152_040 Hb_007100_020--Hb_006152_040 Hb_004918_010--Hb_024758_030 Hb_002601_050 Hb_002601_050 Hb_004918_010--Hb_002601_050 Hb_000307_040 Hb_000307_040 Hb_004918_010--Hb_000307_040 Hb_000077_170 Hb_000077_170 Hb_004918_010--Hb_000077_170 Hb_000866_180 Hb_000866_180 Hb_004918_010--Hb_000866_180 Hb_024758_030--Hb_000307_040 Hb_000347_100 Hb_000347_100 Hb_024758_030--Hb_000347_100 Hb_017043_040 Hb_017043_040 Hb_024758_030--Hb_017043_040 Hb_024758_030--Hb_007885_020 Hb_000639_010 Hb_000639_010 Hb_024758_030--Hb_000639_010 Hb_004346_010 Hb_004346_010 Hb_007885_020--Hb_004346_010 Hb_003688_210 Hb_003688_210 Hb_007885_020--Hb_003688_210 Hb_004545_070 Hb_004545_070 Hb_007885_020--Hb_004545_070 Hb_009767_050 Hb_009767_050 Hb_007885_020--Hb_009767_050 Hb_000668_050 Hb_000668_050 Hb_007885_020--Hb_000668_050 Hb_024948_010 Hb_024948_010 Hb_005357_180--Hb_024948_010 Hb_000832_250 Hb_000832_250 Hb_005357_180--Hb_000832_250 Hb_138229_010 Hb_138229_010 Hb_005357_180--Hb_138229_010 Hb_001226_100 Hb_001226_100 Hb_005357_180--Hb_001226_100 Hb_006916_130 Hb_006916_130 Hb_005357_180--Hb_006916_130 Hb_164300_010 Hb_164300_010 Hb_005357_180--Hb_164300_010 Hb_010534_020 Hb_010534_020 Hb_000300_100--Hb_010534_020 Hb_003398_040 Hb_003398_040 Hb_000300_100--Hb_003398_040 Hb_010381_040 Hb_010381_040 Hb_000300_100--Hb_010381_040 Hb_000310_060 Hb_000310_060 Hb_000300_100--Hb_000310_060 Hb_000310_120 Hb_000310_120 Hb_000300_100--Hb_000310_120 Hb_001587_040 Hb_001587_040 Hb_000300_100--Hb_001587_040 Hb_000172_090 Hb_000172_090 Hb_006152_040--Hb_000172_090 Hb_000958_040 Hb_000958_040 Hb_006152_040--Hb_000958_040 Hb_011930_170 Hb_011930_170 Hb_006152_040--Hb_011930_170 Hb_000003_060 Hb_000003_060 Hb_006152_040--Hb_000003_060 Hb_093458_020 Hb_093458_020 Hb_006152_040--Hb_093458_020 Hb_000500_340 Hb_000500_340 Hb_006152_040--Hb_000500_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.901025 0.409588 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.475732 0 0 0.408757 0.317872

CAGE analysis