Hb_002601_050

Information

Type -
Description -
Location Contig2601: 21761-25500
Sequence    

Annotation

kegg
ID rcu:RCOM_0897610
description Boron transporter, putative
nr
ID XP_002517565.1
description Boron transporter, putative [Ricinus communis]
swissprot
ID Q9XI23
description Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1
trembl
ID B9RUZ6
description Boron transporter, putative OS=Ricinus communis GN=RCOM_0897610 PE=4 SV=1
Gene Ontology
ID GO:0016021
description boron transporter 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27110: 21981-22590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002601_050 0.0 - - Boron transporter, putative [Ricinus communis]
2 Hb_000077_170 0.1572794633 - - PREDICTED: GPI-anchored protein LORELEI-like [Jatropha curcas]
3 Hb_001140_050 0.1789432422 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1 [Jatropha curcas]
4 Hb_036437_010 0.1889812835 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
5 Hb_001163_110 0.2083985823 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
6 Hb_000511_030 0.2148979274 - - PREDICTED: uncharacterized protein LOC105636463 [Jatropha curcas]
7 Hb_010638_010 0.2157925013 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
8 Hb_000264_050 0.2167045194 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
9 Hb_001863_530 0.2233004907 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000808_130 0.2244588643 - - 3-5 exonuclease, putative [Ricinus communis]
11 Hb_003905_020 0.2266252687 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
12 Hb_001379_120 0.2266799144 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
13 Hb_101517_010 0.227908724 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
14 Hb_001141_340 0.2327191811 - - PREDICTED: cysteine synthase [Jatropha curcas]
15 Hb_001534_060 0.2353684047 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
16 Hb_169383_010 0.2357175655 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
17 Hb_003371_080 0.2360891659 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
18 Hb_004918_010 0.2361691545 - - protein binding protein, putative [Ricinus communis]
19 Hb_001268_170 0.2417176503 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
20 Hb_002307_190 0.2419493116 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002601_050 Hb_002601_050 Hb_000077_170 Hb_000077_170 Hb_002601_050--Hb_000077_170 Hb_001140_050 Hb_001140_050 Hb_002601_050--Hb_001140_050 Hb_036437_010 Hb_036437_010 Hb_002601_050--Hb_036437_010 Hb_001163_110 Hb_001163_110 Hb_002601_050--Hb_001163_110 Hb_000511_030 Hb_000511_030 Hb_002601_050--Hb_000511_030 Hb_010638_010 Hb_010638_010 Hb_002601_050--Hb_010638_010 Hb_004918_010 Hb_004918_010 Hb_000077_170--Hb_004918_010 Hb_081930_010 Hb_081930_010 Hb_000077_170--Hb_081930_010 Hb_000077_170--Hb_001140_050 Hb_000077_170--Hb_010638_010 Hb_003905_020 Hb_003905_020 Hb_000077_170--Hb_003905_020 Hb_008195_060 Hb_008195_060 Hb_001140_050--Hb_008195_060 Hb_001031_140 Hb_001031_140 Hb_001140_050--Hb_001031_140 Hb_143629_180 Hb_143629_180 Hb_001140_050--Hb_143629_180 Hb_001141_180 Hb_001141_180 Hb_001140_050--Hb_001141_180 Hb_001728_070 Hb_001728_070 Hb_001140_050--Hb_001728_070 Hb_001140_050--Hb_036437_010 Hb_001863_530 Hb_001863_530 Hb_036437_010--Hb_001863_530 Hb_009692_050 Hb_009692_050 Hb_036437_010--Hb_009692_050 Hb_147976_010 Hb_147976_010 Hb_036437_010--Hb_147976_010 Hb_003598_070 Hb_003598_070 Hb_036437_010--Hb_003598_070 Hb_003750_110 Hb_003750_110 Hb_036437_010--Hb_003750_110 Hb_002284_290 Hb_002284_290 Hb_036437_010--Hb_002284_290 Hb_000808_130 Hb_000808_130 Hb_001163_110--Hb_000808_130 Hb_005000_110 Hb_005000_110 Hb_001163_110--Hb_005000_110 Hb_000711_030 Hb_000711_030 Hb_001163_110--Hb_000711_030 Hb_017434_040 Hb_017434_040 Hb_001163_110--Hb_017434_040 Hb_000638_220 Hb_000638_220 Hb_001163_110--Hb_000638_220 Hb_000020_090 Hb_000020_090 Hb_001163_110--Hb_000020_090 Hb_003371_080 Hb_003371_080 Hb_000511_030--Hb_003371_080 Hb_149644_030 Hb_149644_030 Hb_000511_030--Hb_149644_030 Hb_003623_080 Hb_003623_080 Hb_000511_030--Hb_003623_080 Hb_002028_020 Hb_002028_020 Hb_000511_030--Hb_002028_020 Hb_003632_020 Hb_003632_020 Hb_000511_030--Hb_003632_020 Hb_004338_050 Hb_004338_050 Hb_000511_030--Hb_004338_050 Hb_001379_120 Hb_001379_120 Hb_010638_010--Hb_001379_120 Hb_005694_050 Hb_005694_050 Hb_010638_010--Hb_005694_050 Hb_002272_220 Hb_002272_220 Hb_010638_010--Hb_002272_220 Hb_000329_500 Hb_000329_500 Hb_010638_010--Hb_000329_500 Hb_000206_170 Hb_000206_170 Hb_010638_010--Hb_000206_170 Hb_010638_010--Hb_001163_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.35692 0.191194 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130558 0 0 0.00680955 0.470836

CAGE analysis