Hb_000511_030

Information

Type -
Description -
Location Contig511: 28757-31322
Sequence    

Annotation

kegg
ID rcu:RCOM_1643610
description hypothetical protein
nr
ID XP_012075130.1
description PREDICTED: uncharacterized protein LOC105636463 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KSX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10369 PE=4 SV=1
Gene Ontology
ID GO:0044699
description la-related protein 6 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000511_030 0.0 - - PREDICTED: uncharacterized protein LOC105636463 [Jatropha curcas]
2 Hb_003371_080 0.0931944879 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
3 Hb_149644_030 0.0955662352 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
4 Hb_003623_080 0.0979428895 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
5 Hb_002028_020 0.0985024869 - - acyltransferase, putative [Ricinus communis]
6 Hb_003632_020 0.0986586828 - - calcium-binding family protein [Populus trichocarpa]
7 Hb_004338_050 0.0998281228 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
8 Hb_008225_050 0.1003682832 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
9 Hb_007537_040 0.1007120017 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
10 Hb_000254_130 0.1009931279 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
11 Hb_000808_130 0.101286732 - - 3-5 exonuclease, putative [Ricinus communis]
12 Hb_001534_060 0.1015953624 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
13 Hb_008195_070 0.1040217059 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000418_130 0.1042038897 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
15 Hb_002272_210 0.1043145393 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
16 Hb_002752_020 0.1044077984 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
17 Hb_001277_350 0.1053222588 - - early light-induced protein, putative [Ricinus communis]
18 Hb_017434_040 0.1058892131 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
19 Hb_001488_230 0.1063079382 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
20 Hb_007597_030 0.1063883313 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000511_030 Hb_000511_030 Hb_003371_080 Hb_003371_080 Hb_000511_030--Hb_003371_080 Hb_149644_030 Hb_149644_030 Hb_000511_030--Hb_149644_030 Hb_003623_080 Hb_003623_080 Hb_000511_030--Hb_003623_080 Hb_002028_020 Hb_002028_020 Hb_000511_030--Hb_002028_020 Hb_003632_020 Hb_003632_020 Hb_000511_030--Hb_003632_020 Hb_004338_050 Hb_004338_050 Hb_000511_030--Hb_004338_050 Hb_008225_050 Hb_008225_050 Hb_003371_080--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_003371_080--Hb_007537_040 Hb_004970_060 Hb_004970_060 Hb_003371_080--Hb_004970_060 Hb_002702_010 Hb_002702_010 Hb_003371_080--Hb_002702_010 Hb_008195_070 Hb_008195_070 Hb_003371_080--Hb_008195_070 Hb_000254_130 Hb_000254_130 Hb_003371_080--Hb_000254_130 Hb_149644_030--Hb_002028_020 Hb_034235_010 Hb_034235_010 Hb_149644_030--Hb_034235_010 Hb_001488_230 Hb_001488_230 Hb_149644_030--Hb_001488_230 Hb_001571_100 Hb_001571_100 Hb_149644_030--Hb_001571_100 Hb_009588_010 Hb_009588_010 Hb_149644_030--Hb_009588_010 Hb_000042_280 Hb_000042_280 Hb_149644_030--Hb_000042_280 Hb_002272_210 Hb_002272_210 Hb_003623_080--Hb_002272_210 Hb_003623_080--Hb_008225_050 Hb_001006_040 Hb_001006_040 Hb_003623_080--Hb_001006_040 Hb_003623_080--Hb_000254_130 Hb_003623_080--Hb_001488_230 Hb_146225_020 Hb_146225_020 Hb_003623_080--Hb_146225_020 Hb_002028_020--Hb_001488_230 Hb_002028_020--Hb_009588_010 Hb_000418_130 Hb_000418_130 Hb_002028_020--Hb_000418_130 Hb_002028_020--Hb_001571_100 Hb_002028_020--Hb_000042_280 Hb_010326_020 Hb_010326_020 Hb_003632_020--Hb_010326_020 Hb_011724_040 Hb_011724_040 Hb_003632_020--Hb_011724_040 Hb_002121_050 Hb_002121_050 Hb_003632_020--Hb_002121_050 Hb_002375_030 Hb_002375_030 Hb_003632_020--Hb_002375_030 Hb_001277_350 Hb_001277_350 Hb_003632_020--Hb_001277_350 Hb_003632_020--Hb_008195_070 Hb_000497_050 Hb_000497_050 Hb_004338_050--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_004338_050--Hb_002752_020 Hb_001999_230 Hb_001999_230 Hb_004338_050--Hb_001999_230 Hb_001307_050 Hb_001307_050 Hb_004338_050--Hb_001307_050 Hb_004338_050--Hb_008225_050 Hb_146255_030 Hb_146255_030 Hb_004338_050--Hb_146255_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.22934 4.76194 2.67527 0 0.0911724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.18414 0 0 0.0295735 6.36283

CAGE analysis