Hb_000077_170

Information

Type -
Description -
Location Contig77: 136135-141810
Sequence    

Annotation

kegg
ID rcu:RCOM_1174780
description hypothetical protein
nr
ID XP_012088414.1
description PREDICTED: GPI-anchored protein LORELEI-like [Jatropha curcas]
swissprot
ID B3GS44
description GPI-anchored protein LORELEI OS=Arabidopsis thaliana GN=LRE PE=2 SV=1
trembl
ID A0A067JX78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25791 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_170 0.0 - - PREDICTED: GPI-anchored protein LORELEI-like [Jatropha curcas]
2 Hb_002601_050 0.1572794633 - - Boron transporter, putative [Ricinus communis]
3 Hb_004918_010 0.2492810857 - - protein binding protein, putative [Ricinus communis]
4 Hb_081930_010 0.2692724178 - - PREDICTED: cucumisin-like [Populus euphratica]
5 Hb_001140_050 0.2723685821 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1 [Jatropha curcas]
6 Hb_010638_010 0.274558239 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
7 Hb_003905_020 0.2900529275 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
8 Hb_000883_160 0.2926529933 - - PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
9 Hb_000866_180 0.2962647001 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
10 Hb_101517_010 0.2968871651 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
11 Hb_001379_120 0.3006383836 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
12 Hb_024758_030 0.3022316801 - - hypothetical protein JCGZ_16050 [Jatropha curcas]
13 Hb_004545_010 0.3023457847 - - acyl carrier protein [Ricinus communis]
14 Hb_000264_050 0.307253166 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
15 Hb_036437_010 0.3109690585 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
16 Hb_001006_110 0.3125607258 - - PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
17 Hb_000301_040 0.3136606263 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
18 Hb_001163_110 0.3163916301 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
19 Hb_148209_040 0.3183305681 - - conserved hypothetical protein [Ricinus communis]
20 Hb_169383_010 0.3189070099 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000077_170 Hb_000077_170 Hb_002601_050 Hb_002601_050 Hb_000077_170--Hb_002601_050 Hb_004918_010 Hb_004918_010 Hb_000077_170--Hb_004918_010 Hb_081930_010 Hb_081930_010 Hb_000077_170--Hb_081930_010 Hb_001140_050 Hb_001140_050 Hb_000077_170--Hb_001140_050 Hb_010638_010 Hb_010638_010 Hb_000077_170--Hb_010638_010 Hb_003905_020 Hb_003905_020 Hb_000077_170--Hb_003905_020 Hb_002601_050--Hb_001140_050 Hb_036437_010 Hb_036437_010 Hb_002601_050--Hb_036437_010 Hb_001163_110 Hb_001163_110 Hb_002601_050--Hb_001163_110 Hb_000511_030 Hb_000511_030 Hb_002601_050--Hb_000511_030 Hb_002601_050--Hb_010638_010 Hb_024758_030 Hb_024758_030 Hb_004918_010--Hb_024758_030 Hb_007100_020 Hb_007100_020 Hb_004918_010--Hb_007100_020 Hb_004918_010--Hb_002601_050 Hb_000307_040 Hb_000307_040 Hb_004918_010--Hb_000307_040 Hb_000866_180 Hb_000866_180 Hb_004918_010--Hb_000866_180 Hb_000853_180 Hb_000853_180 Hb_081930_010--Hb_000853_180 Hb_000879_170 Hb_000879_170 Hb_081930_010--Hb_000879_170 Hb_024468_030 Hb_024468_030 Hb_081930_010--Hb_024468_030 Hb_081930_010--Hb_001140_050 Hb_000003_500 Hb_000003_500 Hb_081930_010--Hb_000003_500 Hb_053422_010 Hb_053422_010 Hb_081930_010--Hb_053422_010 Hb_008195_060 Hb_008195_060 Hb_001140_050--Hb_008195_060 Hb_001031_140 Hb_001031_140 Hb_001140_050--Hb_001031_140 Hb_143629_180 Hb_143629_180 Hb_001140_050--Hb_143629_180 Hb_001141_180 Hb_001141_180 Hb_001140_050--Hb_001141_180 Hb_001728_070 Hb_001728_070 Hb_001140_050--Hb_001728_070 Hb_001140_050--Hb_036437_010 Hb_001379_120 Hb_001379_120 Hb_010638_010--Hb_001379_120 Hb_005694_050 Hb_005694_050 Hb_010638_010--Hb_005694_050 Hb_002272_220 Hb_002272_220 Hb_010638_010--Hb_002272_220 Hb_000329_500 Hb_000329_500 Hb_010638_010--Hb_000329_500 Hb_000206_170 Hb_000206_170 Hb_010638_010--Hb_000206_170 Hb_010638_010--Hb_001163_110 Hb_002307_190 Hb_002307_190 Hb_003905_020--Hb_002307_190 Hb_002759_080 Hb_002759_080 Hb_003905_020--Hb_002759_080 Hb_006916_080 Hb_006916_080 Hb_003905_020--Hb_006916_080 Hb_000393_040 Hb_000393_040 Hb_003905_020--Hb_000393_040 Hb_003905_020--Hb_010638_010 Hb_003905_020--Hb_001379_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.113366 0.0993647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.112709 0 0 0 0.169281

CAGE analysis