Hb_024468_030

Information

Type desease resistance
Description Gene Name: DUF3388
Location Contig24468: 10706-13902
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28800g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_006382142.1
description putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID U5GCE5
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0006s28800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024468_030 0.0 desease resistance Gene Name: DUF3388 putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
2 Hb_003641_030 0.185317866 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
3 Hb_001793_020 0.2064645228 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
4 Hb_005690_030 0.2169367497 - - hypothetical protein VITISV_020378 [Vitis vinifera]
5 Hb_002324_090 0.2234977692 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
6 Hb_001728_110 0.2263416807 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
7 Hb_000318_300 0.2295790942 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105634339 [Jatropha curcas]
8 Hb_001793_050 0.2310740054 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
9 Hb_002272_220 0.2330637326 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000123_370 0.2334674416 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
11 Hb_000544_080 0.2336630977 - - PREDICTED: uncharacterized protein LOC105631062 isoform X3 [Jatropha curcas]
12 Hb_000853_180 0.2347151604 - - kinesin heavy chain, putative [Ricinus communis]
13 Hb_000152_490 0.2353410659 - - PREDICTED: (6-4)DNA photolyase [Jatropha curcas]
14 Hb_188063_030 0.2373700846 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
15 Hb_003549_140 0.2419942587 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_000340_410 0.242552209 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
17 Hb_000105_100 0.2428547267 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
18 Hb_181838_010 0.2433996511 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
19 Hb_005333_200 0.2449747231 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
20 Hb_011519_050 0.2453156437 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]

Gene co-expression network

sample Hb_024468_030 Hb_024468_030 Hb_003641_030 Hb_003641_030 Hb_024468_030--Hb_003641_030 Hb_001793_020 Hb_001793_020 Hb_024468_030--Hb_001793_020 Hb_005690_030 Hb_005690_030 Hb_024468_030--Hb_005690_030 Hb_002324_090 Hb_002324_090 Hb_024468_030--Hb_002324_090 Hb_001728_110 Hb_001728_110 Hb_024468_030--Hb_001728_110 Hb_000318_300 Hb_000318_300 Hb_024468_030--Hb_000318_300 Hb_000105_100 Hb_000105_100 Hb_003641_030--Hb_000105_100 Hb_019837_040 Hb_019837_040 Hb_003641_030--Hb_019837_040 Hb_000120_990 Hb_000120_990 Hb_003641_030--Hb_000120_990 Hb_014361_030 Hb_014361_030 Hb_003641_030--Hb_014361_030 Hb_000390_190 Hb_000390_190 Hb_003641_030--Hb_000390_190 Hb_000465_440 Hb_000465_440 Hb_001793_020--Hb_000465_440 Hb_005333_200 Hb_005333_200 Hb_001793_020--Hb_005333_200 Hb_000665_270 Hb_000665_270 Hb_001793_020--Hb_000665_270 Hb_000749_200 Hb_000749_200 Hb_001793_020--Hb_000749_200 Hb_000402_020 Hb_000402_020 Hb_001793_020--Hb_000402_020 Hb_000146_030 Hb_000146_030 Hb_001793_020--Hb_000146_030 Hb_002045_090 Hb_002045_090 Hb_005690_030--Hb_002045_090 Hb_000123_370 Hb_000123_370 Hb_005690_030--Hb_000123_370 Hb_086122_010 Hb_086122_010 Hb_005690_030--Hb_086122_010 Hb_005690_030--Hb_001793_020 Hb_000000_180 Hb_000000_180 Hb_005690_030--Hb_000000_180 Hb_006130_020 Hb_006130_020 Hb_005690_030--Hb_006130_020 Hb_001405_090 Hb_001405_090 Hb_002324_090--Hb_001405_090 Hb_000442_070 Hb_000442_070 Hb_002324_090--Hb_000442_070 Hb_000302_230 Hb_000302_230 Hb_002324_090--Hb_000302_230 Hb_004459_060 Hb_004459_060 Hb_002324_090--Hb_004459_060 Hb_000393_040 Hb_000393_040 Hb_002324_090--Hb_000393_040 Hb_006620_070 Hb_006620_070 Hb_002324_090--Hb_006620_070 Hb_001421_040 Hb_001421_040 Hb_001728_110--Hb_001421_040 Hb_003177_050 Hb_003177_050 Hb_001728_110--Hb_003177_050 Hb_005488_190 Hb_005488_190 Hb_001728_110--Hb_005488_190 Hb_000373_200 Hb_000373_200 Hb_001728_110--Hb_000373_200 Hb_000679_080 Hb_000679_080 Hb_001728_110--Hb_000679_080 Hb_001231_010 Hb_001231_010 Hb_001728_110--Hb_001231_010 Hb_000483_330 Hb_000483_330 Hb_000318_300--Hb_000483_330 Hb_000350_030 Hb_000350_030 Hb_000318_300--Hb_000350_030 Hb_000608_150 Hb_000608_150 Hb_000318_300--Hb_000608_150 Hb_001545_010 Hb_001545_010 Hb_000318_300--Hb_001545_010 Hb_000008_070 Hb_000008_070 Hb_000318_300--Hb_000008_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0529054 0.011984 0.178595 0.139042 0 0.0350302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0449946 0.0236047 0 0 0.201335

CAGE analysis