Hb_014361_030

Information

Type -
Description -
Location Contig14361: 19329-20447
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18860g
description POPTRDRAFT_760534; hypothetical protein
nr
ID XP_002307294.1
description hypothetical protein POPTR_0005s18860g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H6L9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18860g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11446: 19259-20894 , PASA_asmbl_11447: 19259-20608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014361_030 0.0 - - hypothetical protein POPTR_0005s18860g [Populus trichocarpa]
2 Hb_000120_990 0.1534533171 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
3 Hb_000172_380 0.1760331971 - - small heat-shock protein, putative [Ricinus communis]
4 Hb_000390_190 0.180152254 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003641_030 0.1822120186 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
6 Hb_000320_340 0.188415986 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
7 Hb_000521_090 0.1886220556 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
8 Hb_001148_060 0.1918177382 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
9 Hb_000397_150 0.1948050816 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
10 Hb_000059_270 0.1981952169 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
11 Hb_000062_400 0.1997233906 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000114_150 0.2001739612 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
13 Hb_000105_100 0.2010797456 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
14 Hb_001976_030 0.201472889 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
15 Hb_004735_020 0.2014985507 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
16 Hb_000537_070 0.2019412409 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
17 Hb_000107_590 0.2034960183 - - PREDICTED: tricalbin-3 [Jatropha curcas]
18 Hb_000860_060 0.2060361523 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
19 Hb_001269_500 0.206473454 - - PREDICTED: protein LOW PSII ACCUMULATION 3, chloroplastic-like isoform X2 [Populus euphratica]
20 Hb_000723_350 0.2069067662 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_014361_030 Hb_014361_030 Hb_000120_990 Hb_000120_990 Hb_014361_030--Hb_000120_990 Hb_000172_380 Hb_000172_380 Hb_014361_030--Hb_000172_380 Hb_000390_190 Hb_000390_190 Hb_014361_030--Hb_000390_190 Hb_003641_030 Hb_003641_030 Hb_014361_030--Hb_003641_030 Hb_000320_340 Hb_000320_340 Hb_014361_030--Hb_000320_340 Hb_000521_090 Hb_000521_090 Hb_014361_030--Hb_000521_090 Hb_000397_150 Hb_000397_150 Hb_000120_990--Hb_000397_150 Hb_009288_040 Hb_009288_040 Hb_000120_990--Hb_009288_040 Hb_000922_340 Hb_000922_340 Hb_000120_990--Hb_000922_340 Hb_000680_010 Hb_000680_010 Hb_000120_990--Hb_000680_010 Hb_001269_500 Hb_001269_500 Hb_000120_990--Hb_001269_500 Hb_003994_080 Hb_003994_080 Hb_000120_990--Hb_003994_080 Hb_000059_270 Hb_000059_270 Hb_000172_380--Hb_000059_270 Hb_004735_020 Hb_004735_020 Hb_000172_380--Hb_004735_020 Hb_001080_070 Hb_001080_070 Hb_000172_380--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000172_380--Hb_000114_150 Hb_001220_050 Hb_001220_050 Hb_000172_380--Hb_001220_050 Hb_009020_040 Hb_009020_040 Hb_000172_380--Hb_009020_040 Hb_004306_110 Hb_004306_110 Hb_000390_190--Hb_004306_110 Hb_000062_400 Hb_000062_400 Hb_000390_190--Hb_000062_400 Hb_000860_060 Hb_000860_060 Hb_000390_190--Hb_000860_060 Hb_000189_480 Hb_000189_480 Hb_000390_190--Hb_000189_480 Hb_001976_030 Hb_001976_030 Hb_000390_190--Hb_001976_030 Hb_000920_310 Hb_000920_310 Hb_000390_190--Hb_000920_310 Hb_000105_100 Hb_000105_100 Hb_003641_030--Hb_000105_100 Hb_019837_040 Hb_019837_040 Hb_003641_030--Hb_019837_040 Hb_003641_030--Hb_000120_990 Hb_003641_030--Hb_000390_190 Hb_024468_030 Hb_024468_030 Hb_003641_030--Hb_024468_030 Hb_000399_060 Hb_000399_060 Hb_000320_340--Hb_000399_060 Hb_000320_340--Hb_000189_480 Hb_008406_180 Hb_008406_180 Hb_000320_340--Hb_008406_180 Hb_001157_230 Hb_001157_230 Hb_000320_340--Hb_001157_230 Hb_000320_340--Hb_000860_060 Hb_014361_060 Hb_014361_060 Hb_000320_340--Hb_014361_060 Hb_000117_030 Hb_000117_030 Hb_000521_090--Hb_000117_030 Hb_002681_080 Hb_002681_080 Hb_000521_090--Hb_002681_080 Hb_000521_090--Hb_004735_020 Hb_007933_030 Hb_007933_030 Hb_000521_090--Hb_007933_030 Hb_000521_090--Hb_000062_400 Hb_005375_110 Hb_005375_110 Hb_000521_090--Hb_005375_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.38502 2.27961 11.4882 12.7988 1.93079 0.982388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.97332 1.18032 2.12315 3.34215 23.1112

CAGE analysis