Hb_000483_330

Information

Type transcription factor
Description TF Family: SET
Location Contig483: 297230-302157
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08130g
description hypothetical protein
nr
ID XP_012070093.1
description PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
swissprot
ID O82175
description Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 OS=Arabidopsis thaliana GN=SUVH5 PE=1 SV=1
trembl
ID A0A067KY84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03479 PE=4 SV=1
Gene Ontology
ID GO:0016740
description histone-lysine n- h3 lysine-9 specific suvh6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_330 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
2 Hb_000318_300 0.1711441376 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105634339 [Jatropha curcas]
3 Hb_000684_220 0.2343310809 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000300_480 0.2453788316 - - hypothetical protein RCOM_1321910 [Ricinus communis]
5 Hb_000853_180 0.2488231836 - - kinesin heavy chain, putative [Ricinus communis]
6 Hb_001789_100 0.2490448443 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000056_190 0.2496284705 - - hypothetical protein [Ricinus communis]
8 Hb_000349_200 0.2587578596 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
9 Hb_000011_070 0.2626954519 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
10 Hb_001102_160 0.2642034172 - - PREDICTED: galacturonokinase [Jatropha curcas]
11 Hb_006693_040 0.2670654817 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
12 Hb_000330_020 0.2671765836 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
13 Hb_003894_050 0.2680555038 - - hypothetical protein JCGZ_14524 [Jatropha curcas]
14 Hb_000014_210 0.2682461961 - - amine oxidase, partial [Aphanizomenon flos-aquae]
15 Hb_001195_130 0.2702264976 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001584_280 0.2704552466 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
17 Hb_009222_110 0.2761102505 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
18 Hb_024468_030 0.2767798316 desease resistance Gene Name: DUF3388 putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
19 Hb_015941_010 0.2774288788 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
20 Hb_001488_390 0.2784674818 - - SP1L, putative [Ricinus communis]

Gene co-expression network

sample Hb_000483_330 Hb_000483_330 Hb_000318_300 Hb_000318_300 Hb_000483_330--Hb_000318_300 Hb_000684_220 Hb_000684_220 Hb_000483_330--Hb_000684_220 Hb_000300_480 Hb_000300_480 Hb_000483_330--Hb_000300_480 Hb_000853_180 Hb_000853_180 Hb_000483_330--Hb_000853_180 Hb_001789_100 Hb_001789_100 Hb_000483_330--Hb_001789_100 Hb_000056_190 Hb_000056_190 Hb_000483_330--Hb_000056_190 Hb_000350_030 Hb_000350_030 Hb_000318_300--Hb_000350_030 Hb_024468_030 Hb_024468_030 Hb_000318_300--Hb_024468_030 Hb_000608_150 Hb_000608_150 Hb_000318_300--Hb_000608_150 Hb_001545_010 Hb_001545_010 Hb_000318_300--Hb_001545_010 Hb_000008_070 Hb_000008_070 Hb_000318_300--Hb_000008_070 Hb_030565_050 Hb_030565_050 Hb_000684_220--Hb_030565_050 Hb_002774_120 Hb_002774_120 Hb_000684_220--Hb_002774_120 Hb_000246_130 Hb_000246_130 Hb_000684_220--Hb_000246_130 Hb_000330_020 Hb_000330_020 Hb_000684_220--Hb_000330_020 Hb_000603_020 Hb_000603_020 Hb_000684_220--Hb_000603_020 Hb_000236_160 Hb_000236_160 Hb_000684_220--Hb_000236_160 Hb_009222_110 Hb_009222_110 Hb_000300_480--Hb_009222_110 Hb_000300_480--Hb_000056_190 Hb_006925_050 Hb_006925_050 Hb_000300_480--Hb_006925_050 Hb_001102_160 Hb_001102_160 Hb_000300_480--Hb_001102_160 Hb_000291_290 Hb_000291_290 Hb_000300_480--Hb_000291_290 Hb_000856_400 Hb_000856_400 Hb_000300_480--Hb_000856_400 Hb_000879_170 Hb_000879_170 Hb_000853_180--Hb_000879_170 Hb_000853_180--Hb_000856_400 Hb_015941_010 Hb_015941_010 Hb_000853_180--Hb_015941_010 Hb_005144_120 Hb_005144_120 Hb_000853_180--Hb_005144_120 Hb_000853_180--Hb_000291_290 Hb_017439_010 Hb_017439_010 Hb_000853_180--Hb_017439_010 Hb_019516_060 Hb_019516_060 Hb_001789_100--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_001789_100--Hb_006750_010 Hb_003462_040 Hb_003462_040 Hb_001789_100--Hb_003462_040 Hb_001001_070 Hb_001001_070 Hb_001789_100--Hb_001001_070 Hb_003086_030 Hb_003086_030 Hb_001789_100--Hb_003086_030 Hb_025645_020 Hb_025645_020 Hb_001789_100--Hb_025645_020 Hb_000056_190--Hb_000330_020 Hb_000056_190--Hb_003462_040 Hb_000349_200 Hb_000349_200 Hb_000056_190--Hb_000349_200 Hb_003680_030 Hb_003680_030 Hb_000056_190--Hb_003680_030 Hb_000271_220 Hb_000271_220 Hb_000056_190--Hb_000271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0069179 0.0113924 0.0207597 0.0507004 0 0.00644732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0156923 0 0 0 0.0263096

CAGE analysis