Hb_000318_300

Information

Type transcription factor
Description TF Family: B3
Location Contig318: 299100-303649
Sequence    

Annotation

kegg
ID vvi:100264028
description putative B3 domain-containing protein Os03g0621600
nr
ID XP_012072574.1
description PREDICTED: uncharacterized protein LOC105634339 [Jatropha curcas]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID D7TPT0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_300 0.0 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105634339 [Jatropha curcas]
2 Hb_000483_330 0.1711441376 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
3 Hb_000350_030 0.22597648 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
4 Hb_024468_030 0.2295790942 desease resistance Gene Name: DUF3388 putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
5 Hb_000608_150 0.230752848 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
6 Hb_001545_010 0.2339540578 - - PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]
7 Hb_000008_070 0.2400441625 - - kinase, putative [Ricinus communis]
8 Hb_001789_100 0.2407645068 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006693_040 0.2421233644 - - PREDICTED: homeotic protein female sterile-like [Jatropha curcas]
10 Hb_000083_220 0.2434385991 - - -
11 Hb_002811_050 0.2446726505 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
12 Hb_169383_010 0.2473440672 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
13 Hb_001257_050 0.24758159 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
14 Hb_181838_010 0.2478038972 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
15 Hb_001221_400 0.2480189405 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
16 Hb_000556_010 0.2480385439 - - glycerate dehydrogenase, putative [Ricinus communis]
17 Hb_001793_050 0.250933156 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
18 Hb_001163_020 0.2546326139 desease resistance Gene Name: ABC_trans_N ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_001014_020 0.2558346632 - - gene GA family protein [Populus trichocarpa]
20 Hb_000031_210 0.2567177365 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000318_300 Hb_000318_300 Hb_000483_330 Hb_000483_330 Hb_000318_300--Hb_000483_330 Hb_000350_030 Hb_000350_030 Hb_000318_300--Hb_000350_030 Hb_024468_030 Hb_024468_030 Hb_000318_300--Hb_024468_030 Hb_000608_150 Hb_000608_150 Hb_000318_300--Hb_000608_150 Hb_001545_010 Hb_001545_010 Hb_000318_300--Hb_001545_010 Hb_000008_070 Hb_000008_070 Hb_000318_300--Hb_000008_070 Hb_000684_220 Hb_000684_220 Hb_000483_330--Hb_000684_220 Hb_000300_480 Hb_000300_480 Hb_000483_330--Hb_000300_480 Hb_000853_180 Hb_000853_180 Hb_000483_330--Hb_000853_180 Hb_001789_100 Hb_001789_100 Hb_000483_330--Hb_001789_100 Hb_000056_190 Hb_000056_190 Hb_000483_330--Hb_000056_190 Hb_000347_190 Hb_000347_190 Hb_000350_030--Hb_000347_190 Hb_001677_040 Hb_001677_040 Hb_000350_030--Hb_001677_040 Hb_181838_010 Hb_181838_010 Hb_000350_030--Hb_181838_010 Hb_032631_020 Hb_032631_020 Hb_000350_030--Hb_032631_020 Hb_000056_110 Hb_000056_110 Hb_000350_030--Hb_000056_110 Hb_105033_010 Hb_105033_010 Hb_000350_030--Hb_105033_010 Hb_003641_030 Hb_003641_030 Hb_024468_030--Hb_003641_030 Hb_001793_020 Hb_001793_020 Hb_024468_030--Hb_001793_020 Hb_005690_030 Hb_005690_030 Hb_024468_030--Hb_005690_030 Hb_002324_090 Hb_002324_090 Hb_024468_030--Hb_002324_090 Hb_001728_110 Hb_001728_110 Hb_024468_030--Hb_001728_110 Hb_001819_020 Hb_001819_020 Hb_000608_150--Hb_001819_020 Hb_000608_150--Hb_001545_010 Hb_001231_010 Hb_001231_010 Hb_000608_150--Hb_001231_010 Hb_145745_040 Hb_145745_040 Hb_000608_150--Hb_145745_040 Hb_000083_080 Hb_000083_080 Hb_000608_150--Hb_000083_080 Hb_000608_150--Hb_001728_110 Hb_000904_120 Hb_000904_120 Hb_001545_010--Hb_000904_120 Hb_003723_050 Hb_003723_050 Hb_001545_010--Hb_003723_050 Hb_125573_010 Hb_125573_010 Hb_001545_010--Hb_125573_010 Hb_000684_070 Hb_000684_070 Hb_001545_010--Hb_000684_070 Hb_147028_010 Hb_147028_010 Hb_001545_010--Hb_147028_010 Hb_001257_050 Hb_001257_050 Hb_000008_070--Hb_001257_050 Hb_000139_060 Hb_000139_060 Hb_000008_070--Hb_000139_060 Hb_001278_020 Hb_001278_020 Hb_000008_070--Hb_001278_020 Hb_001541_200 Hb_001541_200 Hb_000008_070--Hb_001541_200 Hb_002246_030 Hb_002246_030 Hb_000008_070--Hb_002246_030 Hb_001474_060 Hb_001474_060 Hb_000008_070--Hb_001474_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00871494 0.0301936 0.0928797 0.145743 0 0.0381092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0395822 0 0 0 0.165095

CAGE analysis