Hb_005690_030

Information

Type -
Description -
Location Contig5690: 55582-58606
Sequence    

Annotation

kegg
ID tcc:TCM_027298
description Serine/threonine-protein kinase bri1, putative
nr
ID CAN73950.1
description hypothetical protein VITISV_020378 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AZG0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020378 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lrr receptor-like serine threonine-protein kinase gso1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005690_030 0.0 - - hypothetical protein VITISV_020378 [Vitis vinifera]
2 Hb_002045_090 0.1817876658 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
3 Hb_000123_370 0.1819384479 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_086122_010 0.1842796644 - - PREDICTED: immunoglobulin-like domain-containing receptor 1 [Jatropha curcas]
5 Hb_001793_020 0.1864778691 - - PREDICTED: uncharacterized protein LOC105628624 [Jatropha curcas]
6 Hb_000000_180 0.1910691797 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
7 Hb_006130_020 0.1989577553 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
8 Hb_000500_350 0.2016965901 - - PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
9 Hb_005333_200 0.2058204504 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
10 Hb_007113_080 0.2095672102 - - PREDICTED: uncharacterized protein LOC105639553 isoform X1 [Jatropha curcas]
11 Hb_000402_020 0.209828223 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_003038_100 0.2103716046 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
13 Hb_005914_050 0.2129101256 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
14 Hb_002272_220 0.2168520777 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000146_030 0.216932629 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
16 Hb_000465_440 0.2169359163 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2-like [Jatropha curcas]
17 Hb_024468_030 0.2169367497 desease resistance Gene Name: DUF3388 putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
18 Hb_012545_040 0.2200897105 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_003470_100 0.2243538035 - - protein binding protein, putative [Ricinus communis]
20 Hb_000212_250 0.2249823882 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005690_030 Hb_005690_030 Hb_002045_090 Hb_002045_090 Hb_005690_030--Hb_002045_090 Hb_000123_370 Hb_000123_370 Hb_005690_030--Hb_000123_370 Hb_086122_010 Hb_086122_010 Hb_005690_030--Hb_086122_010 Hb_001793_020 Hb_001793_020 Hb_005690_030--Hb_001793_020 Hb_000000_180 Hb_000000_180 Hb_005690_030--Hb_000000_180 Hb_006130_020 Hb_006130_020 Hb_005690_030--Hb_006130_020 Hb_004195_140 Hb_004195_140 Hb_002045_090--Hb_004195_140 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_000958_120 Hb_000958_120 Hb_002045_090--Hb_000958_120 Hb_003397_030 Hb_003397_030 Hb_002045_090--Hb_003397_030 Hb_001141_050 Hb_001141_050 Hb_002045_090--Hb_001141_050 Hb_000224_080 Hb_000224_080 Hb_002045_090--Hb_000224_080 Hb_000538_130 Hb_000538_130 Hb_000123_370--Hb_000538_130 Hb_000123_370--Hb_001793_020 Hb_000146_030 Hb_000146_030 Hb_000123_370--Hb_000146_030 Hb_000123_370--Hb_000000_180 Hb_001301_330 Hb_001301_330 Hb_000123_370--Hb_001301_330 Hb_004007_170 Hb_004007_170 Hb_000123_370--Hb_004007_170 Hb_000402_020 Hb_000402_020 Hb_086122_010--Hb_000402_020 Hb_010578_030 Hb_010578_030 Hb_086122_010--Hb_010578_030 Hb_000189_130 Hb_000189_130 Hb_086122_010--Hb_000189_130 Hb_005618_080 Hb_005618_080 Hb_086122_010--Hb_005618_080 Hb_000212_250 Hb_000212_250 Hb_086122_010--Hb_000212_250 Hb_004117_040 Hb_004117_040 Hb_086122_010--Hb_004117_040 Hb_000465_440 Hb_000465_440 Hb_001793_020--Hb_000465_440 Hb_005333_200 Hb_005333_200 Hb_001793_020--Hb_005333_200 Hb_000665_270 Hb_000665_270 Hb_001793_020--Hb_000665_270 Hb_000749_200 Hb_000749_200 Hb_001793_020--Hb_000749_200 Hb_001793_020--Hb_000402_020 Hb_001793_020--Hb_000146_030 Hb_012545_040 Hb_012545_040 Hb_000000_180--Hb_012545_040 Hb_001519_170 Hb_001519_170 Hb_000000_180--Hb_001519_170 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_001711_060 Hb_001711_060 Hb_000000_180--Hb_001711_060 Hb_004459_060 Hb_004459_060 Hb_000000_180--Hb_004459_060 Hb_006130_020--Hb_000402_020 Hb_003752_090 Hb_003752_090 Hb_006130_020--Hb_003752_090 Hb_000076_250 Hb_000076_250 Hb_006130_020--Hb_000076_250 Hb_000996_080 Hb_000996_080 Hb_006130_020--Hb_000996_080 Hb_007904_060 Hb_007904_060 Hb_006130_020--Hb_007904_060 Hb_000056_310 Hb_000056_310 Hb_006130_020--Hb_000056_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102437 0.122888 1.20261 0.563948 0 0.246751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209752 0.329676 0 0.0677046 0.635357

CAGE analysis