Hb_000003_500

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig3: 352658-353823
Sequence    

Annotation

kegg
ID rcu:RCOM_1491210
description GATA transcription factor, putative
nr
ID XP_012069102.1
description PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
swissprot
ID P69781
description GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1
trembl
ID A0A067KXE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24875 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gata transcription factor 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_500 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
2 Hb_006816_380 0.0984463864 - - PREDICTED: kinesin-4-like [Jatropha curcas]
3 Hb_000358_260 0.1057692542 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
4 Hb_052530_020 0.1135415119 - - cytochrome B5 isoform 1, putative [Ricinus communis]
5 Hb_000928_030 0.1135506548 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
6 Hb_012395_240 0.1143957154 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
7 Hb_005833_010 0.1154765549 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
8 Hb_002411_090 0.1164410589 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
9 Hb_163566_010 0.1186266922 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
10 Hb_000915_170 0.1202890496 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
11 Hb_000103_200 0.1237691604 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_010577_020 0.1257108033 - - -
13 Hb_004137_040 0.1267368769 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
14 Hb_000321_110 0.1271293805 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
15 Hb_126714_010 0.1271564306 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
16 Hb_006588_140 0.1295063895 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
17 Hb_007904_150 0.1301216559 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
18 Hb_001956_130 0.1318889549 - - catalytic, putative [Ricinus communis]
19 Hb_012653_050 0.1320828363 - - hypothetical protein RCOM_0460020 [Ricinus communis]
20 Hb_002221_060 0.1321605723 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_500 Hb_000003_500 Hb_006816_380 Hb_006816_380 Hb_000003_500--Hb_006816_380 Hb_000358_260 Hb_000358_260 Hb_000003_500--Hb_000358_260 Hb_052530_020 Hb_052530_020 Hb_000003_500--Hb_052530_020 Hb_000928_030 Hb_000928_030 Hb_000003_500--Hb_000928_030 Hb_012395_240 Hb_012395_240 Hb_000003_500--Hb_012395_240 Hb_005833_010 Hb_005833_010 Hb_000003_500--Hb_005833_010 Hb_000915_170 Hb_000915_170 Hb_006816_380--Hb_000915_170 Hb_006816_380--Hb_012395_240 Hb_006816_380--Hb_000358_260 Hb_006816_380--Hb_000928_030 Hb_006816_380--Hb_052530_020 Hb_000103_200 Hb_000103_200 Hb_006816_380--Hb_000103_200 Hb_010577_020 Hb_010577_020 Hb_000358_260--Hb_010577_020 Hb_000358_260--Hb_000915_170 Hb_000358_260--Hb_005833_010 Hb_056506_040 Hb_056506_040 Hb_000358_260--Hb_056506_040 Hb_000358_260--Hb_000928_030 Hb_052530_020--Hb_000928_030 Hb_004137_040 Hb_004137_040 Hb_052530_020--Hb_004137_040 Hb_000599_150 Hb_000599_150 Hb_052530_020--Hb_000599_150 Hb_002150_090 Hb_002150_090 Hb_052530_020--Hb_002150_090 Hb_000028_190 Hb_000028_190 Hb_052530_020--Hb_000028_190 Hb_052530_020--Hb_000103_200 Hb_000928_030--Hb_000028_190 Hb_000928_030--Hb_004137_040 Hb_002221_060 Hb_002221_060 Hb_000928_030--Hb_002221_060 Hb_000928_030--Hb_000103_200 Hb_004635_120 Hb_004635_120 Hb_012395_240--Hb_004635_120 Hb_000538_090 Hb_000538_090 Hb_012395_240--Hb_000538_090 Hb_012395_240--Hb_000928_030 Hb_000000_390 Hb_000000_390 Hb_012395_240--Hb_000000_390 Hb_189208_070 Hb_189208_070 Hb_012395_240--Hb_189208_070 Hb_126714_010 Hb_126714_010 Hb_005833_010--Hb_126714_010 Hb_163566_010 Hb_163566_010 Hb_005833_010--Hb_163566_010 Hb_006588_140 Hb_006588_140 Hb_005833_010--Hb_006588_140 Hb_005833_010--Hb_010577_020 Hb_001426_020 Hb_001426_020 Hb_005833_010--Hb_001426_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0304716 0.0308033 2.61801 3.28882 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.140326 0 0 0.0223525 2.53944

CAGE analysis