Hb_081930_010

Information

Type -
Description -
Location Contig81930: 3-511
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20400g
description POPTRDRAFT_227262; cucumisin family protein
nr
ID XP_011036040.1
description PREDICTED: cucumisin-like [Populus euphratica]
swissprot
ID Q39547
description Cucumisin OS=Cucumis melo PE=1 SV=1
trembl
ID B9HT42
description Cucumisin family protein OS=Populus trichocarpa GN=POPTR_0010s20400g PE=4 SV=2
Gene Ontology
ID GO:0004252
description cucumisin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081930_010 0.0 - - PREDICTED: cucumisin-like [Populus euphratica]
2 Hb_000853_180 0.2326159613 - - kinesin heavy chain, putative [Ricinus communis]
3 Hb_000879_170 0.2353648396 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
4 Hb_024468_030 0.245412891 desease resistance Gene Name: DUF3388 putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
5 Hb_001140_050 0.2485178573 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1 [Jatropha curcas]
6 Hb_000003_500 0.2553683563 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
7 Hb_053422_010 0.2583722053 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
8 Hb_002601_050 0.2635609242 - - Boron transporter, putative [Ricinus communis]
9 Hb_004108_180 0.2655914663 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
10 Hb_003641_030 0.2664375839 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
11 Hb_008195_060 0.2667713172 transcription factor TF Family: NAC NAC transcription factor 018 [Jatropha curcas]
12 Hb_000077_170 0.2692724178 - - PREDICTED: GPI-anchored protein LORELEI-like [Jatropha curcas]
13 Hb_001729_030 0.2699842381 - - hypothetical protein VITISV_044457 [Vitis vinifera]
14 Hb_001163_110 0.2758115237 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
15 Hb_028487_060 0.2785558236 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
16 Hb_000307_040 0.2824070917 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
17 Hb_001266_150 0.2836806896 - - hypothetical protein JCGZ_14961 [Jatropha curcas]
18 Hb_001227_070 0.284591902 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
19 Hb_000105_100 0.2850561068 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
20 Hb_000866_180 0.2901027023 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]

Gene co-expression network

sample Hb_081930_010 Hb_081930_010 Hb_000853_180 Hb_000853_180 Hb_081930_010--Hb_000853_180 Hb_000879_170 Hb_000879_170 Hb_081930_010--Hb_000879_170 Hb_024468_030 Hb_024468_030 Hb_081930_010--Hb_024468_030 Hb_001140_050 Hb_001140_050 Hb_081930_010--Hb_001140_050 Hb_000003_500 Hb_000003_500 Hb_081930_010--Hb_000003_500 Hb_053422_010 Hb_053422_010 Hb_081930_010--Hb_053422_010 Hb_000853_180--Hb_000879_170 Hb_000856_400 Hb_000856_400 Hb_000853_180--Hb_000856_400 Hb_015941_010 Hb_015941_010 Hb_000853_180--Hb_015941_010 Hb_005144_120 Hb_005144_120 Hb_000853_180--Hb_005144_120 Hb_000291_290 Hb_000291_290 Hb_000853_180--Hb_000291_290 Hb_017439_010 Hb_017439_010 Hb_000853_180--Hb_017439_010 Hb_001227_070 Hb_001227_070 Hb_000879_170--Hb_001227_070 Hb_028487_060 Hb_028487_060 Hb_000879_170--Hb_028487_060 Hb_000879_170--Hb_000856_400 Hb_000012_330 Hb_000012_330 Hb_000879_170--Hb_000012_330 Hb_001357_050 Hb_001357_050 Hb_000879_170--Hb_001357_050 Hb_003641_030 Hb_003641_030 Hb_024468_030--Hb_003641_030 Hb_001793_020 Hb_001793_020 Hb_024468_030--Hb_001793_020 Hb_005690_030 Hb_005690_030 Hb_024468_030--Hb_005690_030 Hb_002324_090 Hb_002324_090 Hb_024468_030--Hb_002324_090 Hb_001728_110 Hb_001728_110 Hb_024468_030--Hb_001728_110 Hb_000318_300 Hb_000318_300 Hb_024468_030--Hb_000318_300 Hb_008195_060 Hb_008195_060 Hb_001140_050--Hb_008195_060 Hb_001031_140 Hb_001031_140 Hb_001140_050--Hb_001031_140 Hb_143629_180 Hb_143629_180 Hb_001140_050--Hb_143629_180 Hb_001141_180 Hb_001141_180 Hb_001140_050--Hb_001141_180 Hb_001728_070 Hb_001728_070 Hb_001140_050--Hb_001728_070 Hb_036437_010 Hb_036437_010 Hb_001140_050--Hb_036437_010 Hb_006816_380 Hb_006816_380 Hb_000003_500--Hb_006816_380 Hb_000358_260 Hb_000358_260 Hb_000003_500--Hb_000358_260 Hb_052530_020 Hb_052530_020 Hb_000003_500--Hb_052530_020 Hb_000928_030 Hb_000928_030 Hb_000003_500--Hb_000928_030 Hb_012395_240 Hb_012395_240 Hb_000003_500--Hb_012395_240 Hb_005833_010 Hb_005833_010 Hb_000003_500--Hb_005833_010 Hb_053422_010--Hb_000879_170 Hb_004108_180 Hb_004108_180 Hb_053422_010--Hb_004108_180 Hb_053422_010--Hb_028487_060 Hb_003768_020 Hb_003768_020 Hb_053422_010--Hb_003768_020 Hb_001431_090 Hb_001431_090 Hb_053422_010--Hb_001431_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244573 0 0.846526 0.842727 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.291777 0 0 0 0.748699

CAGE analysis