Hb_003768_020

Information

Type -
Description -
Location Contig3768: 24582-29146
Sequence    

Annotation

kegg
ID pop:POPTR_0004s11910g
description POPTRDRAFT_1076463; hypothetical protein
nr
ID XP_012084822.1
description PREDICTED: uncharacterized protein LOC105644157 [Jatropha curcas]
swissprot
ID B6HZX5
description 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase OS=Escherichia coli (strain SE11) GN=mhpC PE=3 SV=2
trembl
ID B9H0K3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s11910g PE=4 SV=2
Gene Ontology
ID GO:0016787
description monoacylglycerol lipase abhd6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38387: 24584-29153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003768_020 0.0 - - PREDICTED: uncharacterized protein LOC105644157 [Jatropha curcas]
2 Hb_001729_030 0.1268030874 - - hypothetical protein VITISV_044457 [Vitis vinifera]
3 Hb_003581_230 0.1452268201 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
4 Hb_004220_010 0.1503423936 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
5 Hb_000622_050 0.15428607 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000012_330 0.1543312149 - - pollen specific protein sf21, putative [Ricinus communis]
7 Hb_000976_400 0.1581718538 - - synaptotagmin, putative [Ricinus communis]
8 Hb_002235_070 0.1639052557 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
9 Hb_005725_240 0.1645871149 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
10 Hb_019654_180 0.1648028165 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
11 Hb_004531_170 0.1707845826 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
12 Hb_000373_200 0.171639696 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
13 Hb_000190_230 0.174352905 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
14 Hb_004242_090 0.1760788703 - - hypothetical protein JCGZ_00767 [Jatropha curcas]
15 Hb_002244_020 0.1802565167 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
16 Hb_000951_150 0.1802830897 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
17 Hb_084303_010 0.1807524215 - - conserved hypothetical protein [Ricinus communis]
18 Hb_103474_010 0.181226459 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_119044_010 0.1814389233 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
20 Hb_005532_030 0.1823187734 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003768_020 Hb_003768_020 Hb_001729_030 Hb_001729_030 Hb_003768_020--Hb_001729_030 Hb_003581_230 Hb_003581_230 Hb_003768_020--Hb_003581_230 Hb_004220_010 Hb_004220_010 Hb_003768_020--Hb_004220_010 Hb_000622_050 Hb_000622_050 Hb_003768_020--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_003768_020--Hb_000012_330 Hb_000976_400 Hb_000976_400 Hb_003768_020--Hb_000976_400 Hb_019654_180 Hb_019654_180 Hb_001729_030--Hb_019654_180 Hb_009838_070 Hb_009838_070 Hb_001729_030--Hb_009838_070 Hb_000190_230 Hb_000190_230 Hb_001729_030--Hb_000190_230 Hb_001729_030--Hb_003581_230 Hb_029576_060 Hb_029576_060 Hb_001729_030--Hb_029576_060 Hb_003581_230--Hb_004220_010 Hb_003581_230--Hb_029576_060 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_003581_230--Hb_000976_400 Hb_000032_360 Hb_000032_360 Hb_003581_230--Hb_000032_360 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_004220_010--Hb_000622_050 Hb_001942_010 Hb_001942_010 Hb_004220_010--Hb_001942_010 Hb_000904_120 Hb_000904_120 Hb_004220_010--Hb_000904_120 Hb_004220_010--Hb_000976_400 Hb_084303_010 Hb_084303_010 Hb_004220_010--Hb_084303_010 Hb_000622_050--Hb_000012_330 Hb_000622_050--Hb_000976_400 Hb_012098_160 Hb_012098_160 Hb_000622_050--Hb_012098_160 Hb_005725_240 Hb_005725_240 Hb_000622_050--Hb_005725_240 Hb_004531_170 Hb_004531_170 Hb_000622_050--Hb_004531_170 Hb_000012_330--Hb_012098_160 Hb_003835_080 Hb_003835_080 Hb_000012_330--Hb_003835_080 Hb_012484_050 Hb_012484_050 Hb_000012_330--Hb_012484_050 Hb_000012_330--Hb_005725_240 Hb_001486_280 Hb_001486_280 Hb_000012_330--Hb_001486_280 Hb_000976_400--Hb_005725_240 Hb_000212_410 Hb_000212_410 Hb_000976_400--Hb_000212_410 Hb_000976_400--Hb_001148_110 Hb_000816_240 Hb_000816_240 Hb_000976_400--Hb_000816_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92284 1.96906 26.4065 23.16 2.99296 0.0320477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249862 0.02808 0 1.19012 31.4997

CAGE analysis